API for pctax
Professional Comprehensive Omics Data Analysis
| Global functions | |
|---|---|
| %<>% | Man page |
| %>% | Man page |
| ALDEX | Man page |
| RCbray1 | Man page Source code |
| RDA_plot | Man page |
| a_diversity | Man page Source code |
| a_diversity.data.frame | Man page Source code |
| a_diversity.numeric | Man page Source code |
| a_diversity.pc_otu | Man page Source code |
| add_strip | Man page |
| add_tax | Man page Source code |
| all_ec_info | Man page |
| all_sp_la_zh_name | Man page |
| ann_tree | Man page |
| aor | Man page Source code |
| aor.data.frame | Man page Source code |
| as.b_dist | Man page Source code |
| as.dist.b_dist | Man page Source code |
| b_NTI1 | Man page Source code |
| b_analyse | Man page Source code |
| b_analyse.data.frame | Man page Source code |
| b_res_3d | Man page |
| batch_mediate | Man page Source code |
| bbtt | Man page |
| before_tree | Man page Source code |
| check_taxonkit | Man page Source code |
| convert_taxon_name | Man page Source code |
| cor_net | Man page Source code |
| df2tree | Man page Source code |
| df2tree1 | Man page Source code |
| diff_da | Man page Source code |
| dist_3col | Source code |
| download_taxonkit_dataset | Man page Source code |
| drop_tips_update | Man page Source code |
| easy_tree | Man page |
| envfitt | Man page |
| geo_sim | Man page Source code |
| get_all_sp_la_zh_name | Man page Source code |
| get_diff_type | Man page |
| gp_dis_density | Man page |
| grap_p_test | Man page |
| install_taxonkit | Man page Source code |
| kwtest | Man page |
| list_to_dataframe | Source code |
| load_N_data | Man page Source code |
| load_mpa_df | Man page Source code |
| mat_dist | Man page Source code |
| micro_sbatch | Man page |
| multi_bar | Man page |
| multi_conf | Man page |
| myCAP | Man page |
| myCCA | Man page |
| myRDA | Man page |
| mydbRDA | Man page |
| name_or_id2df | Man page Source code |
| ncm | Man page Source code |
| nst | Man page Source code |
| nti_rc | Man page Source code |
| parse_mpa_taxon | Source code |
| pc_otu | Man page Source code |
| pc_tax1 | Man page |
| pc_valid | Man page Source code |
| pctax | Man page |
| pctax-package | Man page |
| permanova | Man page |
| plot.AOR | Man page |
| plot.NTI_RC | Man page Source code |
| plot.a_res | Man page Source code |
| plot.b_dist | Man page Source code |
| plot.b_res | Man page |
| plot.dist | Man page Source code |
| plot.g_test | Man page |
| plot.ncm_res | Man page Source code |
| plot.pro_res | Man page |
| plot.rare_res | Man page Source code |
| plot.time_cm | Man page |
| plot.zeta_decay | Man page Source code |
| plot.zeta_res | Man page Source code |
| plot_N_cycle | Man page Source code |
| plot_checkm2_res | Man page |
| plot_contigs_quality | Man page |
| plot_element_cycle | Man page Source code |
| plot_gtdb_tr | Man page |
| plot_one_phage | Man page |
| plot_two_tree | Man page |
| pre_assembly_stats | Man page |
| pre_fastp | Man page |
| pre_format_report | Man page |
| pre_genomad | Man page |
| pre_gtdb_tk | Man page |
| pre_tax_table | Man page Source code |
| print.pc_otu | Man page Source code |
| print.virus_res | Man page |
| procrustes_analyse | Man page |
| rare_curve_sample | Man page Source code |
| rare_curve_species | Man page Source code |
| rarefaction | Man page Source code |
| save_all_sp_la_zh_name | Source code |
| stamp_plot | Man page |
| suijisenlin | Man page |
| summary.pc_otu | Man page Source code |
| tax_lca | Man page Source code |
| taxonkit_filter | Man page Source code |
| taxonkit_lca | Man page Source code |
| taxonkit_lineage | Man page Source code |
| taxonkit_list | Man page Source code |
| taxonkit_name2taxid | Man page Source code |
| taxonkit_reformat | Man page Source code |
| time_by_cm | Man page |
| update_ec_info | Source code |
| volcano_p | Man page |
| z_diversity | Man page Source code |
| z_diversity_decay | Man page Source code |
