peptider: Evaluation of Diversity in Nucleotide Libraries

Evaluation of diversity in peptide libraries, including NNN, NNB, NNK/S, and 20/20 schemes. Custom encoding schemes can also be defined. Metrics for evaluation include expected coverage, relative efficiency, and the functional diversity of the library. Peptide-level inclusion probabilities are computable for both the native and custom encoding schemes.

AuthorHeike Hofmann [aut], Eric Hare [aut, cre], GGobi Foundation [aut]
Date of publication2015-09-16 10:05:27
MaintainerEric Hare <erichare@iastate.edu>
LicenseGPL-3
Version0.2.2
https://github.com/heike/peptider

View on CRAN

Functions

BLOSUM80 Man page
codons Man page
coverage Man page
detect Man page
diversity Man page
efficiency Man page
encodingReduce Man page
generateCustom Man page
generateCustomLib Man page
generateCustomNei Man page
generateCustomProbs Man page
genNeighbors Man page
genNeighbors_reduced Man page
getChoices Man page
getCounts Man page
getNeighbors Man page
getNofNeighbors Man page
libBuild Man page
libscheme Man page
makowski Man page
ppeptide Man page
scheme Man page
schemes Man page

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