libBuild: Build peptide library of k-length sequences according to...

In peptider: Evaluation of Diversity in Nucleotide Libraries

Description

Build peptide library of k-length sequences according to specified scheme

Usage

libBuild(k, libscheme, scale1 = 1, scale2 = 1)

Arguments

k	length of peptide sequences
libscheme	library scheme specifying classes of amino acids according to number of encodings last class is reserved for stop tags and other amino acids we are not interested in.
scale1	Scaling factor for first probs
scale2	Scaling factor for second probs

Value

library and library scheme used

Examples

user_scheme <- data.frame(class=c("A", "B", "C", "Z"),
                          aacid=c("SLR", "AGPTV", "CDEFHIKMNQWY", "*"),
                          c=c(3,2,1,1))
user_library <- libBuild(3, user_scheme)

peptider documentation built on May 2, 2019, 2:43 a.m.