genNeighbors_reduced: Calculate neighborhood distribution

In peptider: Evaluation of Diversity in Nucleotide Libraries

Description

Calculate distribution of neighbors under library scheme lib for peptide sequences of length k.

Usage

genNeighbors_reduced(sch, k)

Arguments

sch	library scheme
k	length of the peptide sequences

Value

dataset of peptide sequences: L are amino acid sequences, c0 are codons for self representation, cr is the ratio of #neighbors in first degree neighborhood (not counting self representations) and #codons in self representation N1 is the number of neighbors in codon representation (including self representation) s is the number of peptide sequences described by the label o is the number of peptide sequences reached by permutations

Examples

genNeighbors_reduced(scheme("NNK"), 2)
genNeighbors_reduced(scheme("2020"), 2)

peptider documentation built on May 2, 2019, 2:43 a.m.