genNeighbors: Calculate neighborhood distribution

Description Usage Arguments Value Examples

Description

Calculate distribution of neighbors under library scheme lib for peptide sequences of length k.

Usage

1
genNeighbors(sch, k)

Arguments

sch

library scheme

k

length of the peptide sequences

Value

dataset of peptide sequences: AA are amino acid sequences, c0 are codons for self representation, cr is the ratio of #neighbors in first degree neighborhood (not counting self representations) and #codons in self representation N1 is the number of neighbors in codon representation (including self representation)

Examples

1
2
genNeighbors(scheme("NNK"), 2)
genNeighbors(scheme("2020"), 2)


Search within the peptider package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.