genNeighbors: Calculate neighborhood distribution
In peptider: Evaluation of Diversity in Nucleotide Libraries
Description
Usage
Arguments
Value
Examples
Description
Calculate distribution of neighbors under library scheme lib for peptide sequences of length k.
Usage
1
genNeighbors(sch, k)
Arguments
sch
library scheme
k
length of the peptide sequences
Value
dataset of peptide sequences: AA are amino acid sequences,
c0 are codons for self representation,
cr is the ratio of #neighbors in first degree neighborhood (not counting self representations) and #codons in self representation
N1 is the number of neighbors in codon representation (including self representation)
Examples
1
2
genNeighbors(scheme("NNK"), 2)
genNeighbors(scheme("2020"), 2)
peptider documentation built on May 2, 2019, 2:43 a.m.
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Description Usage Arguments Value Examples
Description
Calculate distribution of neighbors under library scheme lib for peptide sequences of length k.
Usage
1 | genNeighbors(sch, k)
|
Arguments
sch |
library scheme |
k |
length of the peptide sequences |
Value
dataset of peptide sequences: AA are amino acid sequences, c0 are codons for self representation, cr is the ratio of #neighbors in first degree neighborhood (not counting self representations) and #codons in self representation N1 is the number of neighbors in codon representation (including self representation)
Examples
1 2 | genNeighbors(scheme("NNK"), 2)
genNeighbors(scheme("2020"), 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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