ppeptide: Probability of detection of a peptide sequence

In peptider: Evaluation of Diversity in Nucleotide Libraries

Description

use this function for only a few peptide sequences. Any larger number of peptide sequences should be dealt with in the framework of the library scheme and the detect function.

Usage

ppeptide(x, libscheme, N)

Arguments

x	(vector) of character strings of peptide sequences.
libscheme	library scheme under which neighbors are being calculated.
N	number of valid DNA clones investigated

Value

probability of detection

Examples

ppeptide("APE", libscheme="NNK", N=10^8)
ppeptide("HENNING", libscheme="NNK", N=10^8)

Example output

[1] 1
[1] 0.007243035

peptider documentation built on May 2, 2019, 2:43 a.m.