Man pages for peptider
Evaluation of Diversity in Nucleotide Libraries

BLOSUM80BLOSUM80 matrix
codonsCompute the number of codon representations for a (vector of)...
coverageCoverage as expected number of peptides given all possible...
detectDetection probability in a single library of size N
diversityDiversity according to peptides paper (Sieber)
efficiencyRelative efficiency of a library
encodingReduceReduce the regular encoding to an easier/faster format
generateCustomGenerate peptide and library information for a given scheme
generateCustomLibFor a given scheme, generate a dataset with the library...
generateCustomNeiFor a given scheme, generate a dataset with the neighborhood...
generateCustomProbsFor a given scheme, generate a dataset with the peptide...
genNeighborsCalculate neighborhood distribution
genNeighbors_reducedCalculate neighborhood distribution
getChoicesGet the number of peptides that reduce to a particular...
getCountsGet the counts possible for each scheme and k
getNeighborsFind all neighbors of degree one for a set of peptide...
getNofNeighborsCompute the number of neighbor of degree one for a set of...
libBuildBuild peptide library of k-length sequences according to...
libschemeGet the specified library scheme
makowskiDiversity index according to Makowski
ppeptideProbability of detection of a peptide sequence
schemeGet the specified library scheme definition
schemesBuilt-in library schemes for peptider
peptider documentation built on May 29, 2017, 3:58 p.m.