Evaluation of Diversity in Nucleotide Libraries

BLOSUM80 | BLOSUM80 matrix |

codons | Compute the number of codon representations for a (vector of)... |

coverage | Coverage as expected number of peptides given all possible... |

detect | Detection probability in a single library of size N |

diversity | Diversity according to peptides paper (Sieber) |

efficiency | Relative efficiency of a library |

encodingReduce | Reduce the regular encoding to an easier/faster format |

generateCustom | Generate peptide and library information for a given scheme |

generateCustomLib | For a given scheme, generate a dataset with the library... |

generateCustomNei | For a given scheme, generate a dataset with the neighborhood... |

generateCustomProbs | For a given scheme, generate a dataset with the peptide... |

genNeighbors | Calculate neighborhood distribution |

genNeighbors_reduced | Calculate neighborhood distribution |

getChoices | Get the number of peptides that reduce to a particular... |

getCounts | Get the counts possible for each scheme and k |

getNeighbors | Find all neighbors of degree one for a set of peptide... |

getNofNeighbors | Compute the number of neighbor of degree one for a set of... |

libBuild | Build peptide library of k-length sequences according to... |

libscheme | Get the specified library scheme |

makowski | Diversity index according to Makowski |

ppeptide | Probability of detection of a peptide sequence |

scheme | Get the specified library scheme definition |

schemes | Built-in library schemes for peptider |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.