efficiency: Relative efficiency of a library
In peptider: Evaluation of Diversity in Nucleotide Libraries
Description
Usage
Arguments
Value
Examples
Description
Relative efficiency of a peptide library, defined as the ratio of expected diversity of a peptide library relative to its overall number of oligonucleotides
Usage
1
efficiency(k, libscheme, N, lib = NULL, variance = FALSE)
Arguments
k
length of peptide sequences
libscheme
Name (character vector) or definition (data frame) of scheme
N
size of the library
lib
library, if null, libscheme will be used to create it
variance
return the variance instead of the expected value
Value
relative efficiency index between 0 and 1
Examples
1
2
3
efficiency(3, "NNN", 10^2)
efficiency(3, "NNK", 10^2)
efficiency(3, "2020", 10^2) ## 20/20 efficiency is not 1 because of random sampling.
peptider documentation built on May 2, 2019, 2:43 a.m.
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Description Usage Arguments Value Examples
Description
Relative efficiency of a peptide library, defined as the ratio of expected diversity of a peptide library relative to its overall number of oligonucleotides
Usage
1 | efficiency(k, libscheme, N, lib = NULL, variance = FALSE)
|
Arguments
k |
length of peptide sequences |
libscheme |
Name (character vector) or definition (data frame) of scheme |
N |
size of the library |
lib |
library, if null, libscheme will be used to create it |
variance |
return the variance instead of the expected value |
Value
relative efficiency index between 0 and 1
Examples
1 2 3 | efficiency(3, "NNN", 10^2)
efficiency(3, "NNK", 10^2)
efficiency(3, "2020", 10^2) ## 20/20 efficiency is not 1 because of random sampling.
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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