Man pages for peptider
Evaluation of Diversity in Nucleotide Libraries
| BLOSUM80 | BLOSUM80 matrix |
| codons | Compute the number of codon representations for a (vector of)... |
| coverage | Coverage as expected number of peptides given all possible... |
| detect | Detection probability in a single library of size N |
| diversity | Diversity according to peptides paper (Sieber) |
| efficiency | Relative efficiency of a library |
| encodingReduce | Reduce the regular encoding to an easier/faster format |
| generateCustom | Generate peptide and library information for a given scheme |
| generateCustomLib | For a given scheme, generate a dataset with the library... |
| generateCustomNei | For a given scheme, generate a dataset with the neighborhood... |
| generateCustomProbs | For a given scheme, generate a dataset with the peptide... |
| genNeighbors | Calculate neighborhood distribution |
| genNeighbors_reduced | Calculate neighborhood distribution |
| getChoices | Get the number of peptides that reduce to a particular... |
| getCounts | Get the counts possible for each scheme and k |
| getNeighbors | Find all neighbors of degree one for a set of peptide... |
| getNofNeighbors | Compute the number of neighbor of degree one for a set of... |
| libBuild | Build peptide library of k-length sequences according to... |
| libscheme | Get the specified library scheme |
| makowski | Diversity index according to Makowski |
| ppeptide | Probability of detection of a peptide sequence |
| scheme | Get the specified library scheme definition |
| schemes | Built-in library schemes for peptider |
