API for protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
| Global functions | |
|---|---|
| .PTM_MarkerFinder_ | Source code |
| .PTM_MarkerFinder_no_peakplot | Source code |
| .PTM_MarkerFinder_summaryPlot | Source code |
| .PTM_MarkerFinder_writeMGF | Source code |
| .PTM_MarkerFinder_writeMGF_Header | Source code |
| .de_novo | Source code |
| .deisotoperUtilPlot | Source code |
| .determine.peakgroups | Source code |
| .determine.peakgroups.orbitrap | Source code |
| .featureDensityPlot | Source code |
| .gasPhaseFragQuantiles | Source code |
| .getProfileMS2 | Source code |
| .get_ | Source code |
| .get_mascot_protein_hits | Source code |
| .get_ms2 | Source code |
| .get_q_peptide | Source code |
| .insertStandardsLoop | Source code |
| .is.cometdecoy | Source code |
| .is.peak | Source code |
| .isBlockRandomFeasibible | Source code |
| .onAttach | Source code |
| .peakplot.label | Source code |
| .peakplot.pie | Source code |
| .peakplot.putlabel | Source code |
| .peptide2mgf | Source code |
| .ssrc | Source code |
| .ssrc.mascot | Source code |
| .trapez | Source code |
| AA | Man page |
| ADPR | Man page |
| ADPR.annotation | Man page |
| ADPR.lim | Man page |
| ADPR.ms2 | Man page |
| FASTA | Man page |
| Fasta | Man page |
| HexNAc | Man page |
| NN | Man page |
| PTM_MarkerFinder | Man page Source code |
| PTM_MarkerFinder_util | Man page Source code |
| aa2mass | Man page Source code |
| apex | Man page |
| as.data.frame.fragmentIon | Source code |
| as.data.frame.fragmentIonSet | Man page Source code |
| as.data.frame.mascot | Man page Source code |
| as.data.frame.pepxml | Source code |
| as.data.frame.psmSet | Man page Source code |
| as.psm | Source code |
| as.psm.mascot_query | Man page Source code |
| as.psmSet | Man page Man page Source code |
| as.psmSet.mascot | Man page Source code |
| assignPlatePosition | Man page Source code |
| averagine | Man page |
| blockRandom | Man page Source code |
| bymatrix | Man page |
| centroid | Man page Source code |
| de_novo | Man page Source code |
| defaultIon | Man page Source code |
| deisotoper | Man page Source code |
| empai | Man page |
| fasta | Man page |
| fetuinLFQ | Man page |
| findMz | Man page Source code |
| findMz.mascot | Man page Source code |
| findMz.psmSet | Man page Source code |
| findNN | Man page Source code |
| findNN_ | Man page Source code |
| formatXCalibur | Source code |
| fragmentIon | Man page Source code |
| genMod | Man page Source code |
| hydrophobicity | Man page |
| iRT | Man page |
| iRTpeptides | Man page |
| iTRAQ | Man page |
| iTRAQ2GroupAnalysis | Man page Source code |
| insertSamples | Man page Source code |
| ionseries | Man page |
| irt | Man page |
| is.mascot | Man page Source code |
| is.mascot_query | Man page Source code |
| is.psm | Man page Source code |
| is.psmSet | Man page Source code |
| lcmsmap | Man page Source code |
| lcmsoverview | Man page |
| lower_bound_ | Man page Source code |
| mascot | Man page |
| massDeviationPlot | Man page |
| mdp | Man page Source code |
| msms | Man page |
| pPTM | Man page |
| parentIonMass | Man page Source code |
| peaklist | Man page |
| peaklistSet | Man page |
| peakplot | Man page Source code |
| peakplot.label | Man page |
| peakplot.pie | Man page |
| peakplot.putlabel | Man page |
| pep3d | Man page |
| pepmass | Man page |
| pgImporter | Man page Source code |
| pgLFQaov | Man page Source code |
| pgLFQfeature | Man page |
| pgLFQprot | Man page |
| pgLFQtNpq | Man page Source code |
| pim | Man page |
| plot.mascot | Man page Source code |
| plot.mascot_query | Man page Source code |
| plot.psm | Man page |
| plot.psmSet | Man page |
| ppp | Man page Source code |
| pps | Man page Source code |
| pressureProfile | Man page |
| pressureProfilePlot | Man page |
| pressureProfileSummary | Man page |
| profile | Man page |
| protViz | Man page |
| psm | Man page Source code |
| ssrc | Man page Source code |
| summary.cometdecoy | Man page Source code |
| summary.mascot | Man page Source code |
| summary.psmSet | Man page |
| t3pq | Man page |
| tNpq | Man page |
| writeXCalibur | Source code |
