lcmsmap: LC-MS Map

Description Usage Arguments Author(s) References

View source: R/lcmsmap.R

Description

The function graphs a LC-MS map having for all charge states and each single charge state. The rt is on the x axis and the y axis represents the peptide mass.

Usage

1
    lcmsmap(data, charges=2:3, score.cutoff = 30, ...)

Arguments

data

an R data object as it can be obtained by mascotDat2RData.pl or by using mascots export function.

charges

a vector of charge states to be displayed.

score.cutoff

a numeric value taken as score cut-off.

...

pass arguments to plot function.

Author(s)

Christian Panse and Jonas Grossmann 2013;

References

idea taken from from the ISB TPP Pep3D view PMID: 15228367


protViz documentation built on May 27, 2017, 1:02 a.m.

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