Man pages for protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

AAAA - amino acid table
aa2massdetermine the weight if a fiven amino acid sequence
averagineaveragine - a data set conatining isotope envelopes of...
deisotoperfind isotop pattern in a given mass spectrum
de_novode-novo on tandem ms
fastaFASTA format reader
fetuinLFQfetuinLFQ - A data set for evaluation of relative and...
findNNfind index of nearest neighbor
fragmentIonsCompute the b and y Fragment Ions of a Peptide Sequence
genModGenerates all possible modification of a given peptide...
HexNAcHexNAc - Analysis of N-HexNAc glycopeptides by LC-MS/MS,...
iRTpeptidesiRT peptides - independent retention time peptides
iTRAQiTRAQ - A small 8-plex iTRAQ data set with confident...
iTRAQ2GroupAnalysisiTRAQ two group analysis
lcmsmapLC-MS Map
mascotGeneric methods for mascot results
mdpMass Deviation Plot
msmsA data set containing tandem mass spectra of an LCMS...
parentIonMassCompute Parent Ion Mass of a Peptide Sequence
peakplotLabelling of Peptide Fragment Mass Spectra
pgImporterProgenesis Importer Function
pgLFQaoviTRAQ two group analysis
pgLFQfeaturepgLFQfeature - A data set with a featuremap export...
pgLFQprotpgLFQprot - A data set with a featuremap export...
pgLFQtNpqLabel Free Quantification using the top N peptide approach
pppPlotting pressure profile data from Eksigent LC pumps
ppsA misc function for finding NN time slots in pressure profile...
pressureProfileNanoLC pressure profile
psmCompute a matching between a peptide sequence and a MS2...
psmSetpsmSet - a set of peptide spectrum matches
PTM_MarkerFinderPTM MarkerFinder
PTM_MarkerFinder_utilPTM MarkerFinder util plot
ssrcSequence Specific Retention Calculator
protViz documentation built on Jan. 4, 2019, 5:16 p.m.