pgImporter: Progenesis Importer Function
In protViz: Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

pgImporter

R Documentation

Progenesis Importer Function

Description

The function reads a CSV file which is exported using ProgenesisLCMS. The object is flexible when it comes to exported fields, ideally, everything is in the CSV. The delimiter is a semicolon (this setting is ProgenesisLCMS version AND system language setting sensitive). All the information is kept and accessible.

There is an option which allows you to switch the separator.

Usage


    pgImporter(file, sep=';')

Arguments

`file`	A csv file.
`sep`	The field separator character. default vaule is set to a semicolon.

Details

This importer is dedicated to the commercial software ProgenesisLCMS. Nevertheless it is has a simple structure and can be adapted and used also for other maps.

todo: Pass an additonal argument to the pgImporter function which allows to define the separator.