Files in protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

MD5
.Rinstignore
DESCRIPTION
README.md
NAMESPACE
inst/Dockerfile
inst/CITATION
inst/NEWS.Rd
inst/shiny-examples/peakplot/global.R inst/shiny-examples/peakplot/server.R inst/shiny-examples/peakplot/ui.R inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R inst/shiny-examples/PTM_MarkerFinder/server.R inst/shiny-examples/PTM_MarkerFinder/ui.R inst/unitTests/test_ssrc.R inst/unitTests/test_fasta.R inst/unitTests/test_fragmentIon.R inst/unitTests/test_findNN_.R inst/unitTests/test_deisotoper.R inst/unitTests/test_psm.R inst/unitTests/test_aa2mass_main.R inst/unitTests/test_aa2mass_main__verus__parentIonMass.R inst/doc/protViz.R inst/doc/poster.R inst/doc/protViz.pdf inst/doc/PTM_MarkerFinder.pdf
inst/doc/PTM_MarkerFinder.Rnw
inst/doc/poster.Rnw
inst/doc/PTM_MarkerFinder.R
inst/doc/protViz.Rnw
inst/doc/poster.pdf
inst/extdata/P12763.fasta
vignettes/PTM_MarkerFinder.Rnw
vignettes/poster.Rnw
vignettes/protViz.bib
vignettes/protViz.Rnw
vignettes/graphics/FGCZ_Poster_Header_2014.pdf
exec/protViz_mascotDat2RData.pl
exec/protViz_annotateSpecLib_with_protID.py
exec/protViz_dat2R.bash
exec/protViz_fun.bash
exec/protViz_bibliospec2RData.py
exec/protViz_mascot2XML.bash
exec/protViz_extractPressureProfiles.bash
exec/protViz_annotateSpecLib_with_protID_split.bash
exec/protViz_mgf2RData.pl
demo/pressureProfile.R demo/quantification.R demo/PTM_MarkerFinder.R
demo/00Index
demo/peakplot.R R/zzz.R R/de_novo.R R/psm.R R/findNN.R R/mascot.R R/pepxml.R R/deisotoper.R R/mdp.R R/RcppExports.R R/lcmsmap.R R/protViz-package.R R/pgImporter.R R/parentIonMass.R
R/sysdata.rda
R/PTM_MarkerFinder.R R/pgLFQ.R R/fragmentIon.R R/ssrc.R R/genMod.R R/iTRAQ2GroupAnalysis.R R/aa2mass.R R/pp.R R/peakplot.R
src/aa2mass.cpp
src/findNN_.cpp
src/computeFragmentIons.c
src/tryptic-digest.c
src/RcppExports.cpp
src/fasta.cpp
src/computeParentIonMass.c
src/rcppdeisotoperenvelope.h
src/Makevars
src/deisotoper.cpp
src/findNN.c
src/fcat.c
src/protMass.c
src/protViz_init.c
src/base/chemistry/iisotopeenvelope.h
src/base/ms/deisotoper.h
man/fasta.Rd man/msms.Rd man/iTRAQ2GroupAnalysis.Rd man/pressureProfile.Rd man/PTM_MarkerFinder_util.Rd man/iTRAQ.Rd man/peakplot.Rd man/mascot.rd man/findNN.Rd man/AA.Rd man/averagine.Rd man/pgImporter.Rd man/HexNAc.Rd man/pgLFQtNpq.Rd man/fragmentIons.Rd man/deisotoper.Rd man/de_novo.Rd man/parentIonMass.Rd man/iRTpeptides.Rd man/PTM_MarkerFinder.Rd man/pgLFQprot.Rd man/psmSet.Rd man/psm.Rd man/pps.Rd man/lcmsmap.Rd man/ssrc.Rd man/fetuinLFQ.Rd man/pgLFQfeature.Rd man/mdp.Rd man/pgLFQaov.Rd man/ppp.Rd man/genMod.Rd man/aa2mass.Rd
build/vignette.rds
tests/runTests.R
data/pgLFQprot.RData
data/fetuinLFQ.RData
data/msms.RData
data/iTRAQ.RData
data/AA.RData
data/pressureProfile.RData
data/HexNAc.RData
data/iRTpeptides.RData
data/averagine.RData
data/datalist
data/pgLFQfeature.RData
protViz documentation built on Jan. 4, 2019, 5:16 p.m.