Fasta | R Documentation |
Implements as Rcpp module performing tryptic digests and summaries. The support is limited for protein sequences.
Fasta
returns a list
or vector
objects.
Christian Panse <cp@fgcz.ethz.ch> 2006-2017
https://en.wikipedia.org/wiki/FASTA_format
# >sp|P12763|FETUA_BOVIN Alpha-2-HS-glycoprotein OS=Bos taurus fname <- system.file("extdata", name='P12763.fasta', package = "protViz") F <- Fasta$new(fname) F F$summary() F$getTrypticPeptides() plot(parentIonMass(F$getTrypticPeptides()), ssrc(F$getTrypticPeptides()), log='xy') text(parentIonMass(F$getTrypticPeptides()), ssrc(F$getTrypticPeptides()), F$getTrypticPeptides(), pos=3, cex=0.5)
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