Man pages for protViz
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
| AA | AA - amino acid table |
| aa2mass | determine the weight if a fiven amino acid sequence |
| ADPR | ADP Ribosylated Peptide |
| assignPlatePosition | Assign an instrument queue configuration to a plate |
| averagine | averagine - a data set conatining isotope envelopes of... |
| blockRandom | Derive a randomization of a table. |
| centroid | Centroid a spectrum acquired in profile mode |
| deisotoper | find isotop pattern in a given mass spectrum |
| de_novo | de-novo on tandem ms |
| fasta | FASTA format reader |
| fetuinLFQ | fetuinLFQ - A data set for evaluation of relative and... |
| findNN | find index of nearest neighbor |
| fragmentIons | Compute the b and y Fragment Ions of a Peptide Sequence |
| genMod | Generates all possible modification of a given peptide... |
| HexNAc | HexNAc - Analysis of N-HexNAc glycopeptides by LC-MS/MS,... |
| insertSamples | Insert sample on a given position |
| iRTpeptides | iRT peptides - independent retention time peptides |
| iTRAQ | iTRAQ - A small 8-plex iTRAQ data set with confident... |
| iTRAQ2GroupAnalysis | iTRAQ two group analysis |
| lcmsmap | LC-MS Map |
| mascot | Generic methods for mascot results |
| mdp | Mass Deviation Plot |
| msms | A data set containing tandem mass spectra of an LCMS... |
| parentIonMass | Compute Parent Ion Mass of a Peptide Sequence |
| peakplot | Labelling of Peptide Fragment Mass Spectra |
| pgImporter | Progenesis Importer Function |
| pgLFQaov | iTRAQ two group analysis |
| pgLFQfeature | pgLFQfeature - A data set with a featuremap export... |
| pgLFQprot | pgLFQprot - A data set with a featuremap export... |
| pgLFQtNpq | Label Free Quantification using the top N peptide approach |
| ppp | Plotting pressure profile data from Eksigent LC pumps |
| pps | A misc function for finding NN time slots in pressure profile... |
| pressureProfile | NanoLC pressure profile |
| psm | Compute a matching between a peptide sequence and a MS2... |
| psmSet | psmSet - a set of peptide spectrum matches |
| PTM_MarkerFinder | PTM MarkerFinder |
| PTM_MarkerFinder_util | PTM MarkerFinder util plot |
| ssrc | Sequence Specific Retention Calculator |
