Nothing
context("plot_coef")
test_that("plot_coef works", {
skip_if(isnt_karl(), "plot tests only run locally")
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
iron <- iron[,2]
map <- insert_pseudomarkers(iron$gmap, step=1)
probs <- calc_genoprob(iron, map, error_prob=0.002)
pheno <- iron$pheno[,1,drop=FALSE]
covar <- match(iron$covar$sex, c("f", "m")) # make numeric
names(covar) <- rownames(iron$covar)
coef <- scan1coef(probs, pheno, addcovar=covar)
test_plot_coef <- function() plot(coef, map, columns=1:3)
expect_doppelganger("plot_coef", test_plot_coef)
})
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