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rabhit: Inference Tool for Antibody Haplotype
Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and TR chains, based on J, D, or V genes as anchor, by adapting a Bayesian framework. It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene. Citation: Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>. Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.
Getting started
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Package details |
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| Author | Ayelet Peres [aut, cre], Moriah Gidoni [aut], Gur Yaari [aut, cph] |
| Maintainer | Ayelet Peres <peresay@biu.ac.il> |
| License | CC BY-SA 4.0 |
| Version | 0.2.5 |
| URL | https://yaarilab.bitbucket.io/RAbHIT/ |
| Package repository | View on CRAN |
| Installation |
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