rabhit: Inference Tool for Antibody Haplotype

Infers V-D-J haplotypes and gene deletions from AIRR-seq data, based on IGHJ, IGHD or IGHV as anchor, by adapting a Bayesian framework. It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene. Citation: Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>. Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.

Package details

AuthorAyelet Peres [aut, cre], Moriah Gidoni [aut], Gur Yaari [aut, cph]
MaintainerAyelet Peres <peresay@biu.ac.il>
LicenseCC BY-SA 4.0
Version0.1.5
URL https://yaarilab.bitbucket.io/RAbHIT/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("rabhit")

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rabhit documentation built on July 12, 2020, 1:06 a.m.