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rabhit: Inference Tool for Antibody Haplotype
Infers V-D-J (Variable-Diversity-Joining) haplotypes and gene deletions from AIRR-seq (Adaptive Immune Receptor Repertoire sequencing) data for Ig (Immunoglobulin) and TR (T cell Receptor) chains, based on J (Joining), D (Diversity), or V (Variable) genes as anchor, by adapting a Bayesian framework. It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene. Citation: Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>. Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.
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Package details |
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| Author | Ayelet Peres [aut, cre], Moriah Gidoni [aut], Gur Yaari [aut, cph] |
| Maintainer | Ayelet Peres <ayelet.peres@yale.edu> |
| License | CC BY-SA 4.0 |
| Version | 0.4.0 |
| URL | https://github.com/ayeletperes/rabhit https://ayeletperes.github.io/rabhit/ |
| Package repository | View on CRAN |
| Installation |
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