View source: R/graphic_functions.R
plotDeletionsByVpooled | R Documentation |
The plotDeletionsByVpooled
function generates a graphical output for single chromosome D or J gene deletions (for heavy chain only).
plotDeletionsByVpooled( del.df, chain = c("IGH", "IGK", "IGL", "TRB", "TRA"), K_ranges = c(3, 7) )
del.df |
a |
chain |
the IG chain: IGH,IGK,IGL. Default is IGH.. |
K_ranges |
vector of one or two integers for log(K) certainty level thresholds |
A data.frame
created by deletionsByVpooled
.
A single chromosome deletion visualization.
# Load example data and germlines data(samples_db) del_db <- deletionsByVpooled(samples_db) plotDeletionsByVpooled(del_db)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.