plotDeletionsByVpooled: Graphical output for single chromosome D or J gene deletions...

Description Usage Arguments Details Value Examples

View source: R/graphic_functions.R

Description

The plotDeletionsByVpooled function generates a graphical output for single chromosome D or J gene deletions (for heavy chain only).

Usage

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plotDeletionsByVpooled(
  del.df,
  chain = c("IGH", "IGK", "IGL"),
  K_ranges = c(3, 7)
)

Arguments

del.df

a data.frame created by deletionsByVpooled

chain

the IG chain: IGH,IGK,IGL. Default is IGH..

K_ranges

vector of one or two integers for log(K) certainty level thresholds

Details

A data.frame created by deletionsByVpooled.

Value

A single chromosome deletion visualization.

Examples

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# Load example data and germlines
data(samples_db)
del_db <- deletionsByVpooled(samples_db)
plotDeletionsByVpooled(del_db)

rabhit documentation built on July 12, 2020, 1:06 a.m.