samplesHaplotype: Example haplotype inference results
In rabhit: Inference Tool for Antibody Haplotype
samplesHaplotype R Documentation
Example haplotype inference results
Description
A data.frame of example haplotype infrence results from createFullHaplotype after double chromosome deletion inference via deletionsByBinom and non reliable V genes detection via nonReliableVGenes.
Source data is a colletion of IGH human naive b-cell repertiore data from five
individuals (see references). Overall, the data set includes 6 samples.
A single individual has two samples (Individual I5),
one is short read sequences from BIOMED-2 protocol primers for framework 2 region (The sample is annotated I5_FR2).
Usage
samplesHaplotype
Format
A data.frame, in which each row is the haplotype inference summary of a gene of an individual, from the column selected to prefrom the haplptype infrence on.
References
Gidoni, Moriah, et al. Mosaic deletion patterns of the human antibody heavy chain
gene locus shown by Bayesian haplotyping.
Nature Communications. 10.1 (2019): 628.
See Also
See createFullHaplotype for detailed column descriptions.
rabhit documentation built on Feb. 16, 2023, 9:25 p.m.
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| samplesHaplotype | R Documentation |
Example haplotype inference results
Description
A data.frame of example haplotype infrence results from createFullHaplotype after double chromosome deletion inference via deletionsByBinom and non reliable V genes detection via nonReliableVGenes.
Source data is a colletion of IGH human naive b-cell repertiore data from five
individuals (see references). Overall, the data set includes 6 samples.
A single individual has two samples (Individual I5),
one is short read sequences from BIOMED-2 protocol primers for framework 2 region (The sample is annotated I5_FR2).
Usage
samplesHaplotype
Format
A data.frame, in which each row is the haplotype inference summary of a gene of an individual, from the column selected to prefrom the haplptype infrence on.
References
Gidoni, Moriah, et al. Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping. Nature Communications. 10.1 (2019): 628.
See Also
See createFullHaplotype for detailed column descriptions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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