nonReliableVGenes Takes a
data.frame in AIRR format and detect non reliable IGHV genes. A non reliable gene is
when the ratio of the multiple assignments with a gene is below the threshold.
nonReliableVGenes(clip_db, thresh = 0.9, appearance = 0.01)
the threshold to consider non reliable gene. Defualt is 0.9
the minimun fraction of gene appearance to be considered for reliability check. Defualt is 0.01.
The function accepts a
data.frame in AIRR format (https://changeo.readthedocs.io/en/stable/standard.html) containing the following columns:
'subject': subject names
'v_call': V allele call(s) (in an IMGT format)
a nested list of non reliable genes for all subject.
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