samples_db: Example IGH human naive b-cell repertiore

Description Usage Format References

Description

A data.frame of example IGH human naive b-cell repertiore data from five individuals (see references). Overall, the data set includes 6 samples. A single individual has two samples (Individual I5), one is short read sequences from BIOMED-2 protocol primers for framework 2 region (The sample is annotated I5_FR2).

Usage

1

Format

A data.frame in Change-O format (https://changeo.readthedocs.io/en/version-0.4.1—airr-standards/standard.html) containing the following columns:

References

Gidoni, Moriah, et al. Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping. Nature Communications. 10.1 (2019): 628.


rabhit documentation built on July 12, 2020, 1:06 a.m.