samples_db: Example IGH human naive b-cell repertiore
In rabhit: Inference Tool for Antibody Haplotype
samples_db R Documentation
Example IGH human naive b-cell repertiore
Description
A data.frame of example IGH human naive b-cell repertiore data from five
individuals (see references). Overall, the data set includes 6 samples.
A single individual has two samples (Individual I5),
one is short read sequences from BIOMED-2 protocol primers for framework 2 region (The sample is annotated I5_FR2).
Usage
samples_db
Format
A data.frame in Change-O format (https://changeo.readthedocs.io/en/stable/standard.html) containing the following columns:
-
'SUBJECT': subject names
-
'V_CALL': V allele call(s) (in an IMGT format)
-
'D_CALL': D allele call(s) (in an IMGT format, only for heavy chains)
-
'J_CALL': J allele call(s) (in an IMGT format)
References
Gidoni, Moriah, et al. Mosaic deletion patterns of the human antibody heavy chain
gene locus shown by Bayesian haplotyping.
Nature Communications. 10.1 (2019): 628.
rabhit documentation built on Feb. 16, 2023, 9:25 p.m.
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| samples_db | R Documentation |
Example IGH human naive b-cell repertiore
Description
A data.frame of example IGH human naive b-cell repertiore data from five
individuals (see references). Overall, the data set includes 6 samples.
A single individual has two samples (Individual I5),
one is short read sequences from BIOMED-2 protocol primers for framework 2 region (The sample is annotated I5_FR2).
Usage
samples_db
Format
A data.frame in Change-O format (https://changeo.readthedocs.io/en/stable/standard.html) containing the following columns:
-
'SUBJECT': subject names -
'V_CALL': V allele call(s) (in an IMGT format) -
'D_CALL': D allele call(s) (in an IMGT format, only for heavy chains) -
'J_CALL': J allele call(s) (in an IMGT format)
References
Gidoni, Moriah, et al. Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping. Nature Communications. 10.1 (2019): 628.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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