View source: R/graphic_functions.R
deletionHeatmap | R Documentation |
The deletionHeatmap
function generates a graphical output of the single chromosome deletions in multiple samples.
deletionHeatmap( hap_table, chain = c("IGH", "IGK", "IGL", "TRB", "TRA"), kThreshDel = 3, genes_order = NULL, html_output = FALSE )
hap_table |
haplotype summary table. See details. |
chain |
the IG chain: IGH,IGK,IGL. Default is IGH. |
kThreshDel |
the minimum lK (log10 of the Bayes factor) used in |
genes_order |
A vector of the genes by the desired order. Default is by GENE.loc |
html_output |
If TRUE, a html5 interactive graph is outputed insteaed of the normal plot. Default is FALSE |
A data.frame
created by createFullHaplotype
.
A single chromosome deletion visualization.
# Plotting single choromosme deletion from haplotype inference deletionHeatmap(samplesHaplotype)
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