geneUsage: Double chromosome deletion by relative gene usage

Description Usage Arguments Details Value

View source: R/functions.R

Description

The geneUsage function calculates the relative gene usage.

Usage

1
geneUsage(clip_db, chain = c("IGH", "IGK", "IGL"))

Arguments

clip_db

a data.frame in AIRR format. See details.

chain

the IG chain: IGH,IGK,IGL. Default is IGH.

Details

The function accepts a data.frame in AIRR format (https://changeo.readthedocs.io/en/stable/standard.html) containing the following columns:

Value

A data.frame, in which each row is the relative gene usage value per individual.

The output containes the following columns:


rabhit documentation built on July 12, 2020, 1:06 a.m.