Files in rbiom

Read/Write, Analyze, and Visualize 'BIOM' Data

README.md R/s3_methods.r R/boxplot.r R/tree_plot.r R/plot_layers.r R/data.r R/stats_table.r R/bdiv_heatmap.r R/stats_emmeans.r R/plot_build.r R/biom_merge.r R/bdiv_ord_plot.r R/taxa_heatmap.r R/stats_wilcox.r R/validate.r R/read_biom.r R/documentation.r R/utils.r R/read_tree.r R/rare_multiplot.r R/corrplot_stats.r R/taxa_stacked.r R/biom_ply.r R/provenance.r R/embed.r R/import_table.r R/adiv_table.r R/clustering.r R/plot_palettes.r R/apcoa.r R/zzz.r R/boxplot_stats.r R/taxa_map.r R/rbiom_objects.r R/cache.r R/geom_dendro.r R/distmat_stats.r R/corrplot.r R/distmat_ord_table.r R/write_xlsx.r R/plot_heatmap.r R/stats_common.r R/bdiv_ord_table.r R/rbiom-deprecated.r R/rbiom-package.R R/rarefy.r R/corrplot_build.r R/speed_ups.r R/boxplot_build.r R/taxa_table.r R/bdiv_table.r R/as_rbiom.r R/plot_facets.r R/rare_stacked.r R/read_fasta.r R/convert.r R/write_biom.r R/reexport.r tests/testthat.r tests/testthat/test-plot_palettes.r tests/testthat/test-validate.r tests/testthat/test-as_rbiom.r tests/testthat/test-adiv_table.r tests/testthat/test-bdiv_ord_plot.r tests/testthat/test-bdiv_table.r tests/testthat/test-read_tree.r tests/testthat/test-write_biom.r tests/testthat/test-taxa_map.r tests/testthat/test-biom_merge.r tests/testthat/test-distmat_ord_table.r tests/testthat/test-import_table.r tests/testthat/test-stats_wilcox.r tests/testthat/test-taxa_heatmap.r tests/testthat/test-write_xlsx.r tests/testthat/test-boxplot_build.r tests/testthat/test-biom_ply.r tests/testthat/test-corrplot.r tests/testthat/test-read_biom.r tests/testthat/test-rare_stacked.r tests/testthat/test-read_fasta.r tests/testthat/_test_file_io.r tests/testthat/test-boxplot.r tests/testthat/test-utils.r tests/testthat/test-embed.r tests/testthat/test-stats_table.r tests/testthat/test-cache.r tests/testthat/test-provenance.r tests/testthat/test-convert.r tests/testthat/test-rarefy.r tests/testthat/_test-accessors.r tests/testthat/_test_distance.r tests/testthat/test-bdiv_heatmap.r tests/testthat/test-s3_methods.r tests/testthat/test-plot_heatmap.r tests/testthat/test-taxa_table.r tests/testthat/_test_subsetting.r tests/testthat/test-rbiom_objects.r tests/testthat/_test_calculations.r tests/testthat/helper.r tests/testthat/test-stats_emmeans.r tests/testthat/_test_tree.r tests/testthat/test-rbiom-deprecated.r tests/testthat/test-taxa_stacked.r tests/testthat/test-clustering.r tests/testthat/_test-adiv_boxplot.r tests/testthat/test-rare_multiplot.r tests/testthat/test-distmat_stats.r data/babies.r data/hmp50.r data/gems.r exec/rbiom_subtree.r exec/rbiom_subset.r man/stats_table.Rd man/read_fasta.Rd man/taxa_heatmap.Rd man/taxa_boxplot.Rd man/biom_merge.Rd man/bdiv_table.Rd man/with.Rd man/bdiv_ord_plot.Rd man/reexports.Rd man/pull.rbiom.Rd man/rarefy_cols.Rd man/bdiv_corrplot.Rd man/hmp50.Rd man/distmat_stats.Rd man/documentation_dist_test.Rd man/rare_multiplot.Rd man/documentation_rank.2.Rd man/sample_sums.Rd man/as_rbiom.Rd man/babies.Rd man/bdply.Rd man/tree_subset.Rd man/documentation_heatmap.Rd man/export.Rd man/distmat_ord_table.Rd man/bdiv_heatmap.Rd man/as.matrix.rbiom.Rd man/plot_heatmap.Rd man/speed.Rd man/documentation_return.biom.Rd man/documentation_clusters.Rd man/stats_corrplot.Rd man/rare_stacked.Rd man/adiv_boxplot.Rd man/taxa_sums.Rd man/rarefy.Rd man/read_tree.Rd man/stats_boxplot.Rd man/rare_corrplot.Rd man/adiv_corrplot.Rd man/rbiom-deprecated.Rd man/documentation_plot_return.Rd man/adiv_table.Rd man/bdiv_boxplot.Rd man/taxa_stats.Rd man/gems.Rd man/slice_metadata.Rd man/documentation_default.Rd man/modify_metadata.Rd man/documentation_cmp.Rd man/taxa_clusters.Rd man/rbiom-package.Rd man/read_biom.Rd man/adiv_matrix.Rd man/bdiv_clusters.Rd man/as.list.rbiom.Rd man/glimpse.rbiom.Rd man/adiv_stats.Rd man/bdiv_stats.Rd man/taxa_corrplot.Rd man/documentation_rank.NULL.Rd man/documentation_biom.rbiom.Rd man/taxa_matrix.Rd man/convert_to.Rd man/bdiv_ord_table.Rd man/write_biom.Rd man/documentation_taxa.4.Rd man/taxa_map.Rd man/rbiom_objects.Rd man/taxa_stacked.Rd man/subset.Rd