API for refdb
A DNA Reference Library Manager
| Global functions | |
|---|---|
| .filter_ref_scope | Source code |
| .filter_seq_ambiguous | Source code |
| .filter_seq_duplicates | Source code |
| .filter_seq_homopolymers | Source code |
| .filter_seq_length | Man page Source code |
| .filter_seq_primer | Source code |
| .filter_seq_stopcodon | Source code |
| .filter_tax_precision | Source code |
| .filter_tax_precision2 | Source code |
| check_fields | Man page Source code |
| entrez_fetch_retry | Source code |
| fields_dbs | Man page |
| filter_scores | Man page |
| get_ncbi_taxonomy | Man page Source code |
| get_ncbi_taxonomy_retry | Source code |
| igraph_from_taxo | Man page Source code |
| make_ncbi_table | Man page Source code |
| ncbi_taxo_rank | Man page Source code |
| process_geo_ncbi | Man page Source code |
| refdb | Man page |
| refdb-package | Man page |
| refdb_check_seq_conflict | Man page Source code |
| refdb_check_seq_homogeneity | Man page Source code |
| refdb_check_tax_conflict | Man page Source code |
| refdb_check_tax_typo | Man page Source code |
| refdb_clean_seq_crop_primers | Man page Source code |
| refdb_clean_seq_remove_gaps | Man page Source code |
| refdb_clean_seq_remove_sideN | Man page Source code |
| refdb_clean_tax_NA | Man page Source code |
| refdb_clean_tax_harmonize_nomenclature | Man page Source code |
| refdb_clean_tax_remove_blank | Man page Source code |
| refdb_clean_tax_remove_extra | Man page Source code |
| refdb_clean_tax_remove_subsp | Man page Source code |
| refdb_clean_tax_remove_uncertainty | Man page Source code |
| refdb_export_dada2 | Man page Source code |
| refdb_export_idtaxa | Man page Source code |
| refdb_export_mothur | Man page Source code |
| refdb_fill_tax_downstream | Man page Source code |
| refdb_fill_tax_upstream | Man page Source code |
| refdb_filter_ref_scope | Man page Source code |
| refdb_filter_seq_ambiguous | Man page Source code |
| refdb_filter_seq_duplicates | Man page Source code |
| refdb_filter_seq_homopolymers | Man page Source code |
| refdb_filter_seq_length | Man page Source code |
| refdb_filter_seq_primer | Man page Source code |
| refdb_filter_seq_stopcodon | Man page Source code |
| refdb_filter_tax_na | Man page Source code |
| refdb_filter_tax_precision | Man page Source code |
| refdb_get_fields | Man page Source code |
| refdb_import_BOLD | Man page Source code |
| refdb_import_NCBI | Man page Source code |
| refdb_merge | Man page Source code |
| refdb_plot_map | Man page Source code |
| refdb_plot_seqlen_hist | Man page Source code |
| refdb_plot_tax_barplot | Man page Source code |
| refdb_plot_tax_tree | Man page Source code |
| refdb_plot_tax_treemap | Man page Source code |
| refdb_report | Man page Source code |
| refdb_sample_tax | Man page Source code |
| refdb_set_fields | Man page Source code |
| refdb_set_fields_BOLD | Man page Source code |
| refdb_set_fields_NCBI | Man page Source code |
| refdb_set_fields_PR2 | Man page Source code |
| refdb_set_fields_diatbarcode | Man page Source code |
| refdb_set_ncbitax | Man page Source code |
| refdb_write_fields | Man page Source code |
| sanity_check | Source code |
| taxid_file | Source code |
| valid_taxo_rank | Man page Source code |
| xml_extract | Man page Source code |
