Files in refdb
A DNA Reference Library Manager
MD5
README.md
NAMESPACE
DESCRIPTION
R/import_NCBI.R
R/refdb_plots.R
R/refdb_filter.R
R/refdb_export.R
R/import_BOLD.R
R/refdb_sample.R
R/refdb_ncbi_taxonomy.R
R/refdb-package.R
R/refdb_checks.R
R/refdb_merge.R
R/fields.R
R/refdb_clean.R
R/refdb_fill_taxo.R
inst/doc/intro_refdb.html
inst/doc/ncbi_bold.Rmd
inst/doc/intro_refdb.R
inst/doc/ncbi_bold.html
inst/doc/intro_refdb.Rmd
inst/extdata/yaml_ncbi.yml
inst/extdata/baetidae_bold.csv
inst/extdata/yaml_bold.yml
inst/extdata/ephem.csv
inst/extdata/yaml_diatbarcode.yml
inst/extdata/homogeneity.csv
inst/extdata/yaml_pr2.yml
inst/rmd_templates/check_report.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/data_baetidae_bold_mothur.txt
tests/testthat/test_plots.R
tests/testthat/test_fill.R
tests/testthat/test_merge.R
tests/testthat/test_export.R
tests/testthat/data_baetidae_bold_dada_taxo.fasta
tests/testthat/test_reports.R
tests/testthat/data_baetidae_bold.csv
tests/testthat/test_setfields.R
tests/testthat/data_fragilaria_ncbi.csv
tests/testthat/test_filter.R
tests/testthat/data_baetidae_bold_dada_species.fasta
tests/testthat/data_tocheck_homogeneity.csv
tests/testthat/data_yaml_bold.yml
tests/testthat/test_import_web.R
tests/testthat/data_toclean_bold.csv
tests/testthat/data_tofilter_bold.csv
tests/testthat/data_baetidae_bold_mothur.fasta
tests/testthat/test_clean.R
vignettes/ncbi_bold.Rmd
vignettes/ncbi_bold.Rmd.orig
vignettes/intro_refdb.Rmd
man/refdb_plot_tax_treemap.Rd
man/refdb_check_seq_homogeneity.Rd
man/process_geo_ncbi.Rd
man/refdb_clean_tax_harmonize_nomenclature.Rd
man/refdb_clean_seq_remove_gaps.Rd
man/fields_dbs.Rd
man/get_ncbi_taxonomy.Rd
man/valid_taxo_rank.Rd
man/refdb_clean_tax_remove_uncertainty.Rd
man/refdb_filter_ref_scope.Rd
man/ncbi_taxo_rank.Rd
man/xml_extract.Rd
man/refdb_plot_tax_barplot.Rd
man/refdb_merge.Rd
man/refdb_report.Rd
man/refdb_set_fields.Rd
man/filter_scores.Rd
man/refdb_filter_seq_ambiguous.Rd
man/refdb_write_fields.Rd
man/refdb_import_BOLD.Rd
man/refdb_clean_seq_remove_sideN.Rd
man/refdb_check_tax_typo.Rd
man/refdb_plot_tax_tree.Rd
man/make_ncbi_table.Rd
man/refdb_filter_seq_homopolymers.Rd
man/refdb_sample_tax.Rd
man/refdb_plot_map.Rd
man/refdb_filter_seq_primer.Rd
man/check_fields.Rd
man/refdb_clean_tax_NA.Rd
man/refdb_filter_seq_length.Rd
man/refdb_get_fields.Rd
man/refdb_check_tax_conflict.Rd
man/refdb_check_seq_conflict.Rd
man/igraph_from_taxo.Rd
man/refdb-package.Rd
man/refdb_filter_tax_na.Rd
man/refdb_fill_tax_upstream.Rd
man/refdb_filter_seq_duplicates.Rd
man/refdb_clean_tax_remove_subsp.Rd
man/refdb_export_idtaxa.Rd
man/refdb_export_mothur.Rd
man/refdb_clean_tax_remove_blank.Rd
man/refdb_plot_seqlen_hist.Rd
man/refdb_export_dada2.Rd
man/refdb_import_NCBI.Rd
man/refdb_set_ncbitax.Rd
man/refdb_filter_seq_stopcodon.Rd
man/refdb_clean_seq_crop_primers.Rd
man/refdb_filter_tax_precision.Rd
man/refdb_clean_tax_remove_extra.Rd
man/refdb_fill_tax_downstream.Rd
man/figures/logo.png
