API for ricu
Intensive Care Unit Data with R

Global functions
.onAttach Source code
.onLoad Source code
.onUnload Source code
`$<-.id_tbl` Source code
`[.id_tbl` Source code
`[<-.id_tbl` Source code
`[[<-.id_tbl` Source code
`dimnames<-.id_tbl` Source code
`names<-.col_cfg` Source code
`names<-.concept` Source code
`names<-.id_cfg` Source code
`names<-.id_tbl` Source code
`names<-.item` Source code
`names<-.tbl_cfg` Source code
`row.names<-.id_tbl` Source code
add_concept Man page Source code
add_src_col Source code
add_weight Man page Source code
agg_or_na Source code
aggregate.cncpt Source code
aggregate.id_tbl Man page Source code
aggregate.rec_cncpt Source code
aggregate_fun Source code
align_units Source code
all_equal Source code
all_fun Source code
all_map Source code
all_null Source code
anyDuplicated.id_tbl Man page Source code
apply_map Man page Source code
approx_art Source code
are_in Source code
as.data.frame.id_tbl Man page Source code
as.data.table.id_tbl Man page Source code
as.list.concept Source code
as.list.item Source code
as.list.src_env Man page Source code
as_col_cfg Man page Source code
as_col_cfg.col_cfg Source code
as_col_cfg.default Source code
as_col_cfg.src_cfg Source code
as_col_cfg.src_tbl Source code
as_concept Man page Source code
as_concept.cncpt Source code
as_concept.concept Source code
as_concept.default Source code
as_concept.list Source code
as_dt_min Source code
as_id_cfg Man page Source code
as_id_cfg.default Source code
as_id_cfg.id_cfg Source code
as_id_cfg.src_cfg Source code
as_id_cfg.src_env Source code
as_id_tbl Man page Source code
as_id_tbl.data.table Source code
as_id_tbl.default Source code
as_id_tbl.id_tbl Source code
as_interval Source code
as_item Man page Source code
as_item.cncpt Source code
as_item.concept Source code
as_item.default Source code
as_item.item Source code
as_item.itm Source code
as_item.list Source code
as_item.rec_cncpt Source code
as_ptype Man page Source code
as_ptype.data.frame Source code
as_ptype.data.table Source code
as_ptype.default Source code
as_ptype.id_tbl Source code
as_src_cfg Man page Source code
as_src_cfg.default Source code
as_src_cfg.src_cfg Source code
as_src_cfg.src_env Source code
as_src_env Man page Source code
as_src_env.character Source code
as_src_env.default Source code
as_src_env.src_env Source code
as_src_env.src_tbl Source code
as_src_tbl Man page Source code
as_src_tbl.character Source code
as_src_tbl.default Source code
as_src_tbl.itm Source code
as_src_tbl.src_env Man page Source code
as_src_tbl.src_tbl Source code
as_tbl_cfg Man page Source code
as_tbl_cfg.default Source code
as_tbl_cfg.src_cfg Source code
as_tbl_cfg.src_tbl Source code
as_tbl_cfg.tbl_cfg Source code
as_ts_tbl Man page Source code
as_ts_tbl.data.table Source code
as_ts_tbl.default Source code
as_ts_tbl.id_tbl Source code
as_ts_tbl.ts_tbl Source code
as_win_tbl Man page Source code
as_win_tbl.data.table Source code
as_win_tbl.default Source code
as_win_tbl.id_tbl Source code
as_win_tbl.ts_tbl Source code
as_win_tbl.win_tbl Source code
assert_that Source code
attach_src Man page Source code
attach_src.character Man page Source code
attach_src.default Source code
attach_src.src_cfg Man page Source code
attached_srcs Man page Source code
aumc Man page
aumc_bxs Source code
aumc_death Source code
aumc_dur Source code
aumc_rass Source code
aumc_rate Source code
aumc_rate_kg Source code
aumc_rate_units Source code
auto_attach_srcs Man page Source code
avpu Man page Source code
big_mark Source code
binary_op Man page Source code
blood_cell_ratio Source code
bmi Man page Source code
bullet Source code
calc_dur Man page Source code
cat_line Source code
cbind_id_tbl Man page Source code
change_dur_unit Man page Source code
change_id Man page Source code
change_id_helper Source code
change_interval Man page Source code
change_interval.data.table Source code
change_interval.default Source code
change_interval.ts_tbl Source code
check_file_sha256 Source code
check_interval Source code
check_prefix Source code
check_scalar Source code
check_valid Source code
check_vector Source code
chr_ply Source code
chr_xtr Source code
chr_xtr_null Source code
class_descr Source code
coalesce Source code
col_ply Source code
col_renamer Man page Source code
col_renamer.data.table Source code
col_renamer.default Source code
col_renamer.id_tbl Source code
col_renamer.ts_tbl Source code
col_renamer.win_tbl Source code
col_spec Source code
collapse Man page Source code
collect_dots Source code
combine_callbacks Man page Source code
combine_date_time Source code
combine_messages Source code
comp_na Man page Source code
complete_tbl_itm Source code
concat Source code
concept Man page Source code
concept_availability Man page Source code
config_paths Man page Source code
convert_unit Man page Source code
create_intervals Source code
create_progress_handler Source code
csv_to_fst Source code
data Man page
data_col Man page Source code
data_dir Man page Source code
data_env Source code
data_pkg_avail Source code
data_var Man page Source code
data_vars Man page Source code
days Man page Source code
dbl_ply Source code
dbl_xtr Source code
dbl_xtr_null Source code
def_desc Source code
default_config_path Source code
default_var_names Source code
default_vars Man page Source code
default_vars.col_cfg Source code
default_vars.src_tbl Source code
delta_cummin Man page Source code
delta_min Man page Source code
delta_start Man page Source code
detach_src Man page Source code
determine_tables Source code
dex_to_10 Source code
digest Source code
digest_lst Source code
dim_brak Source code
dim_desc Source code
dim_str Source code
dimnames.itm Source code
distribute_amount Source code
do_call Source code
do_callback Man page Source code
do_callback.col_itm Source code
do_callback.default Source code
do_callback.fun_itm Source code
do_callback.hrd_itm Source code
do_callback.itm Source code
do_callback.rec_cncpt Source code
do_itm_load Man page Source code
do_itm_load.col_itm Source code
do_itm_load.default Source code
do_itm_load.fun_itm Source code
do_itm_load.hrd_itm Source code
do_itm_load.itm Source code
do_itm_load.nul_itm Source code
downgrade_id Man page Source code
downgrade_id.default Source code
downgrade_id.id_tbl Man page Source code
downgrade_id.ts_tbl Man page Source code
download_check_data Source code
download_file Source code
download_pysionet_file Source code
download_src Man page Source code
download_src.aumc_cfg Man page Source code
download_src.character Man page Source code
download_src.default Source code
download_src.hirid_cfg Source code
download_src.src_cfg Man page Source code
dt_gforce Man page Source code
duplicated.id_tbl Man page Source code
dur_col Man page Source code
dur_unit Man page Source code
dur_var Man page Source code
dur_var.default Source code
dur_var.itm Source code
dur_var.win_tbl Source code
eicu Man page
eicu_adx Source code
eicu_age Source code
eicu_demo Man page
eicu_dex_inf Source code
eicu_dex_med Source code
eicu_duration Source code
eicu_extract_unit Source code
eicu_rate_kg Source code
eicu_rate_units Source code
enbraket Source code
ensure_dirs Source code
evals_to_fun Source code
expand Man page Source code
expand_intervals Source code
explain_dictionary Man page Source code
fahr_to_cels Source code
fail_type Source code
fill_gaps Man page Source code
filter_bounds Source code
filter_vars Source code
first_elem Man page Source code
fmt_msg Man page Source code
force_type Source code
format.col_cfg Source code
format.concept Source code
format.id_cfg Source code
format.id_tbl Source code
format.item Source code
format.src_env Source code
format.tbl_cfg Source code
format_assert Source code
fst_file_name Source code
fst_file_names Source code
fwd_concept Source code
gcs Man page Source code
get_config Man page Source code
get_cred Source code
get_file_size Source code
get_hirid_ids Source code
get_itm_var Man page Source code
get_itm_var.default Source code
get_itm_var.itm Source code
get_one Source code
get_one_unique Source code
get_sha256 Source code
get_target Man page Source code
get_target.cncpt Source code
get_target.default Source code
get_target.itm Source code
group_measurements Source code
grp_mount_to_rate Source code
gunzip Source code
has_col Source code
has_cols Source code
has_gaps Man page
has_interval Source code
has_length Source code
has_no_gaps Man page Source code
has_rows Source code
has_time_cols Source code
hirid Man page
hirid_death Source code
hirid_duration Source code
hirid_rate Source code
hirid_rate_kg Source code
hirid_urine Source code
hirid_vent Source code
hop Man page Source code
hopper Source code
hours Man page Source code
id_cfg_op Source code
id_col Man page Source code
id_desc Source code
id_map Man page Source code
id_map_helper Man page Source code
id_map_helper.default Source code
id_map_helper.src_env Man page Source code
id_name_to_type Source code
id_orig_helper Man page Source code
id_orig_helper.default Source code
id_orig_helper.miiv_env Man page Source code
id_orig_helper.src_env Man page Source code
id_origin Man page Source code
id_tbl Man page Source code
id_type_to_name Source code
id_var Man page Source code
id_var_opts Man page Source code
id_vars Man page Source code
id_vars.col_cfg Source code
id_vars.default Source code
id_vars.id_cfg Source code
id_vars.id_tbl Source code
id_vars.itm Source code
id_vars.src_tbl Source code
id_win_helper Man page Source code
id_win_helper.aumc_env Man page Source code
id_win_helper.default Source code
id_win_helper.eicu_env Man page Source code
id_win_helper.hirid_env Man page Source code
id_win_helper.miiv_env Man page Source code
id_win_helper.mimic_env Man page Source code
id_windows Man page Source code
identity_callback Source code
import_src Man page Source code
import_src.aumc_cfg Man page Source code
import_src.character Man page Source code
import_src.default Source code
import_src.src_cfg Man page Source code
import_tbl Man page Source code
import_tbl.default Source code
import_tbl.tbl_cfg Man page Source code
in_failure Source code
index_col Man page Source code
index_var Man page Source code
index_var.col_cfg Source code
index_var.default Source code
index_var.itm Source code
index_var.src_tbl Source code
index_var.ts_tbl Source code
init_cncpt Man page Source code
init_cncpt.cncpt Man page Source code
init_cncpt.default Source code
init_cncpt.fct_cncpt Man page Source code
init_cncpt.num_cncpt Man page Source code
init_cncpt.rec_cncpt Man page Source code
init_cncpt.unt_cncpt Man page Source code
init_itm Man page Source code
init_itm.col_itm Man page Source code
init_itm.default Source code
init_itm.fun_itm Man page Source code
init_itm.hrd_itm Man page Source code
init_itm.itm Man page Source code
init_itm.rgx_itm Man page Source code
init_itm.sel_itm Man page Source code
install_data_pkgs Source code
int_ply Source code
int_xtr Source code
int_xtr_null Source code
interval Man page Source code
interval.default Source code
interval.difftime Source code
interval.itm Source code
interval.ts_tbl Source code
is_cncpt Man page
is_col_cfg Man page
is_concept Man page
is_data_avail Man page Source code
is_disjoint Source code
is_false Man page Source code
is_id_cfg Man page
is_id_tbl Man page
is_in Source code
is_interactive Source code
is_interval Source code
is_intish Source code
is_item Man page
is_itm Man page
is_number Source code
is_one_min Source code
is_pkg_installed Source code
is_regular Man page Source code
is_scalar Source code
is_sorted Man page Source code
is_src_cfg Man page
is_src_env Man page
is_src_tbl Man page
is_target Source code
is_tbl_avail Man page Source code
is_tbl_cfg Man page
is_true Man page Source code
is_ts_tbl Man page
is_type Source code
is_unique Man page Source code
is_val Man page Source code
is_win_tbl Man page
item Man page Source code
last_elem Man page Source code
lgl_ply Source code
lgl_xtr Source code
lgl_xtr_null Source code
load_concepts Man page Source code
load_concepts.character Man page Source code
load_concepts.cncpt Man page Source code
load_concepts.concept Man page Source code
load_concepts.default Source code
load_concepts.fct_cncpt Man page Source code
load_concepts.item Man page Source code
load_concepts.itm Man page Source code
load_concepts.lgl_cncpt Man page Source code
load_concepts.num_cncpt Man page Source code
load_concepts.rec_cncpt Man page Source code
load_concepts.unt_cncpt Man page Source code
load_dictionary Man page Source code
load_difftime Man page Source code
load_difftime.aumc_tbl Man page Source code
load_difftime.character Man page Source code
load_difftime.default Source code
load_difftime.eicu_tbl Man page Source code
load_difftime.hirid_tbl Man page Source code
load_difftime.miiv_tbl Man page Source code
load_difftime.mimic_tbl Man page Source code
load_eiau Source code
load_id Man page Source code
load_id.character Man page Source code
load_id.default Man page Source code
load_id.fun_itm Man page Source code
load_id.itm Man page Source code
load_id.src_tbl Man page Source code
load_mihi Source code
load_one_concept_helper Source code
load_src Man page Source code
load_src.character Man page Source code
load_src.default Source code
load_src.src_tbl Man page Source code
load_src_cfg Man page Source code
load_ts Man page Source code
load_ts.character Man page Source code
load_ts.default Man page Source code
load_ts.fun_itm Man page Source code
load_ts.itm Man page Source code
load_ts.src_tbl Man page Source code
load_win Man page Source code
load_win.character Man page Source code
load_win.default Man page Source code
load_win.fun_itm Man page Source code
load_win.itm Man page Source code
load_win.src_tbl Man page Source code
locf Source code
los_callback Source code
lst_inv Source code
lst_xtr Source code
main_class Source code
map Source code
map_vals Source code
match_fio2 Source code
max.num_cncpt Source code
max_or_na Man page
merge.id_tbl Man page Source code
merge_fst_chunks Source code
merge_lst Man page Source code
merge_patid Source code
merge_ranges Source code
meta_vars Man page Source code
meta_vars.default Source code
meta_vars.id_tbl Source code
meta_vars.itm Source code
meta_vars.ts_tbl Source code
meta_vars.win_tbl Source code
mews_score Man page Source code
miiv Man page
mimic Man page
mimic_abx_presc Source code
mimic_age Source code
mimic_demo Man page
mimic_dur_incv Source code
mimic_dur_inmv Source code
mimic_kg_rate Source code
mimic_rate_cv Source code
mimic_rate_mv Source code
mimic_sampling Source code
mimv_rate Source code
min.num_cncpt Source code
min_as_mins Source code
min_or_na Man page
min_time_unit Source code
mins Man page Source code
mk_col_cfg Source code
mk_id_cfg Source code
mk_tbl_cfg Source code
ms_as_mins Source code
msg_progress Man page Source code
msg_ricu Source code
n_col Source code
n_part Source code
n_row Source code
n_tick Man page Source code
n_tick.cncpt Source code
n_tick.concept Source code
n_tick.default Source code
n_tick.item Source code
n_tick.itm Source code
n_tick.tbl_cfg Source code
names.col_cfg Source code
names.concept Source code
names.id_cfg Source code
names.item Source code
names.src_env Source code
names.tbl_cfg Source code
new_cncpt Man page Source code
new_col_cfg Man page Source code
new_concept Man page Source code
new_id_cfg Man page Source code
new_id_tbl Source code
new_item Man page Source code
new_itm Man page Source code
new_names Source code
new_src_cfg Man page Source code
new_src_env Man page Source code
new_src_tbl Man page Source code
new_tbl Source code
new_tbl_cfg Man page Source code
new_ts_tbl Source code
new_win_tbl Source code
news_score Man page Source code
norepi_equiv Man page Source code
not_null Source code
not_val Man page Source code
null_or Source code
null_or_subs Source code
obeys_interval Source code
order_rename Source code
orig_cols Source code
padded_capped_diff Source code
padded_diff Source code
pafi Man page Source code
parse_dictionary Source code
parse_src_cfg Source code
part_desc Source code
partition_col Source code
partition_fun Source code
partition_table Source code
percent_as_numeric Source code
pkg_env Source code
pkg_name Source code
prcnt Source code
prep_sel Source code
prepare_query Man page Source code
prepare_query.col_itm Source code
prepare_query.default Source code
prepare_query.rgx_itm Source code
print.cncpt Source code
print.id_tbl Source code
print.itm Source code
print.src_cfg Source code
print.src_env Source code
progress_init Source code
progress_tick Source code
qsofa_score Man page Source code
quote_bt Source code
raw_file_name Source code
raw_file_names Source code
rbind_id_tbl Man page Source code
rbind_lst Man page Source code
re_time Source code
read_dictionary Source code
read_json Source code
read_line Source code
read_psv Man page Source code
read_src_cfg Source code
reclass_tbl Man page Source code
reclass_tbl.NULL Source code
reclass_tbl.data.frame Source code
reclass_tbl.data.table Source code
reclass_tbl.default Source code
reclass_tbl.id_tbl Source code
reclass_tbl.ts_tbl Source code
reclass_tbl.win_tbl Source code
reduce Source code
release_questions Source code
remove_gaps Man page Source code
rename Source code
rename_cols Man page Source code
rename_data_var Source code
rep_along Source code
rep_arg Source code
replace_na Man page Source code
replace_na.data.table Source code
replace_na.default Source code
replace_na.logical Source code
replace_na.numeric Source code
report_problems Source code Source code
report_set_unit Source code
resolve_id_hint Source code
ricu Man page
ricu-package Man page
ricu_cols Source code
ricu_untar Source code
rm_cols Man page Source code
rm_na Man page Source code
rm_na_val_var Source code
round_to Source code
row.names.id_tbl Source code
safe_src_get Source code
safe_tbl_get Source code
safi Man page Source code
same_length Source code
same_time Source code
same_unit Source code
secs Man page Source code
sep3 Man page Source code
set_attributes Source code
set_callback Man page Source code
set_callback.default Source code
set_callback.itm Source code
set_config Man page Source code
set_id_vars Source code
set_target Man page Source code
set_target.cncpt Source code
set_target.concept Source code
set_target.default Source code
set_target.item Source code
set_target.itm Source code
set_units Source code
set_val Man page Source code
setup_src_data Man page Source code
setup_src_data.character Source code
setup_src_data.src_cfg Source code
setup_src_env Man page Source code
setup_src_env.default Source code Source code
setup_src_env.src_cfg Man page Source code
shift_year Source code
si_abx Source code
si_and Source code
si_or Source code
si_samp Source code
silent_as Source code
silent_as_num Source code
sirs_score Man page Source code
slide Man page Source code
slide_index Man page Source code
sofa_cardio Man page Source code
sofa_cns Man page
sofa_coag Man page
sofa_liver Man page
sofa_renal Man page Source code
sofa_resp Man page Source code
sofa_score Man page Source code
sofa_single Source code
sort.id_tbl Man page Source code
split.id_tbl Man page Source code
split_patid Source code
split_write Source code
src_data_avail Man page Source code
src_data_dir Man page Source code
src_extra_cfg Man page Source code
src_extra_cfg.default Source code
src_extra_cfg.src_cfg Source code
src_extra_cfg.src_env Source code
src_file_exist Source code
src_name Man page Source code
src_name.cncpt Source code
src_name.col_cfg Source code
src_name.concept Source code
src_name.default Source code
src_name.id_cfg Source code
src_name.item Source code
src_name.itm Source code
src_name.src_cfg Source code
src_name.src_env Source code
src_name.src_tbl Source code
src_name.tbl_cfg Source code
src_prefix Man page Source code
src_prefix.default Source code
src_prefix.src_cfg Source code
src_prefix.src_env Source code
src_tbl_avail Man page Source code
src_to_pkg_name Source code
src_url Man page Source code
stay_windows Man page Source code
stay_windows.character Man page Source code
stay_windows.default Man page Source code
stay_windows.list Man page Source code
stay_windows.src_env Man page Source code
stop_generic Source code
stop_ricu Source code
str.id_tbl Source code
str.src_env Source code
str_to_fun Source code
strip_class Source code
sub_trans Source code
subset_src Man page Source code
subset_src.cncpt Man page Source code
subset_src.concept Man page Source code
subset_src.item Man page Source code
suggest Source code
supp_o2 Man page Source code
susp_inf Man page Source code
sys_env Source code
sys_name Source code
target_inherits Source code
tbl_name Man page Source code
tbl_name.col_cfg Source code
tbl_name.default Source code
tbl_name.fun_itm Source code
tbl_name.itm Source code
tbl_name.nul_itm Source code
tbl_name.src_tbl Source code
tbl_name.tbl_cfg Source code
tbl_sum.id_tbl Source code
tbl_sum.src_tbl Source code
tbl_sum.ts_tbl Source code
tbl_sum.win_tbl Source code
temp_unclass Source code
time_step Man page Source code
time_unit Man page Source code
time_vars Man page Source code
time_vars.col_cfg Source code
time_vars.data.frame Source code
time_vars.default Source code
time_vars.itm Source code
time_vars.src_tbl Source code
time_vars.win_tbl Source code
top_n Source code
transform_fun Man page Source code
trunc_time Source code
try_add_vars Man page Source code
try_add_vars.cncpt Source code
try_add_vars.default Source code
try_add_vars.item Source code
try_add_vars.itm Source code
try_add_vars.rec_cncpt Source code
try_reclass Source code
ts_tbl Man page Source code
ts_to_win_tbl Source code
unclass_tbl Man page Source code
unclass_tbl.data.frame Source code
unclass_tbl.default Source code
unclass_tbl.id_tbl Source code
unclass_tbl.ts_tbl Source code
unclass_tbl.win_tbl Source code
unique.id_tbl Man page Source code
unit_var Source code
units.num_cncpt Source code
units_to_unit Source code
unlst Source code
unlst_str Source code
unmerge Man page Source code
upgrade_id Man page Source code
upgrade_id.default Source code
upgrade_id.id_tbl Man page Source code
upgrade_id.ts_tbl Man page Source code
urine24 Man page Source code
user_config_path Source code
val_or_na Source code
val_var Source code
validate_tbl Man page Source code
validate_tbl.data.frame Source code
validate_tbl.default Source code
validate_tbl.id_tbl Source code
validate_tbl.ts_tbl Source code
validate_tbl.win_tbl Source code
vaso60 Man page Source code
vaso_ind Man page Source code
vec_proxy_compare.id_cfg Source code
vec_ptype_abbr.col_cfg Source code
vec_ptype_abbr.id_cfg Source code
vec_ptype_abbr.tbl_cfg Source code
vec_ptype_full.col_cfg Source code
vec_ptype_full.id_cfg Source code
vec_ptype_full.tbl_cfg Source code
vent_flag Source code
vent_ind Man page Source code
warn_arg Source code
warn_dot_ident Source code
warn_dots Source code
warn_ricu Source code
weeks Man page Source code
win_tbl Man page Source code
with_progress Source code
wrap_list Source code
wrap_ptype Source code
write_json Source code
write_psv Man page Source code
xtr_null Source code
ricu documentation built on Oct. 31, 2022, 1:08 a.m.