API for riskRegression
Risk Regression Models and Prediction Scores for Survival Analysis with Competing Risks
| Global functions | |
|---|---|
| .monotonize | Source code |
| .onAttach | Source code |
| .predictSurv_CSC | Source code |
| ARR | Man page Source code |
| ATE_COMPARISONS | Source code |
| ATE_TI | Source code |
| AUC.binary | Source code |
| AUC.competing.risks | Source code |
| AUC.survival | Source code |
| Brier.binary | Source code |
| Brier.competing.risks | Source code |
| Brier.survival | Source code |
| CSC | Man page Source code |
| Cforest | Man page Source code |
| Ctree | Man page Source code |
| FGR | Man page Source code |
| GLMnet | Man page Source code |
| Hal9001 | Man page Source code |
| IFbeta_cpp | Source code |
| IFlambda0_cpp | Source code |
| IPA | Man page Source code |
| IPA.CauseSpecificCox | Man page Source code |
| IPA.coxph | Man page Source code |
| IPA.default | Man page Source code |
| IPA.glm | Man page Source code |
| LRR | Man page Source code |
| Melanoma | Man page |
| Paquid | Man page |
| Score | Man page Source code |
| Score.list | Man page Source code |
| SmcFcs | Man page Source code |
| SuperPredictor | Man page Source code |
| SurvResponseVar | Man page Source code |
| `iidCox` | Source code |
| `influenceTest` | Source code |
| `is.iidCox` | Source code |
| `subsetIndex` | Source code |
| anova.ate | Man page Source code |
| as.data.table.ate | Man page Source code |
| as.data.table.influenceTest | Man page Source code |
| as.data.table.predictCSC | Man page Source code |
| as.data.table.predictCox | Man page Source code |
| as.data.table.transformCIBP | Source code |
| ate | Man page Source code |
| ate_checkArgs | Source code |
| ate_initArgs | Source code |
| aucLoobFun | Source code |
| autoplot.Score | Man page Source code |
| autoplot.ate | Man page Source code |
| autoplot.predictCSC | Man page Source code |
| autoplot.predictCox | Man page Source code |
| baseHaz_cpp | Man page Source code |
| baseHaz_prodlim | Source code |
| boot2pvalue | Man page Source code |
| boxplot.Score | Man page Source code |
| calcAICcif_R | Source code |
| calcAIFsurv_cpp | Source code |
| calcBootATE | Source code |
| calcE_cpp | Source code |
| calcItermIn | Source code |
| calcItermOut | Source code |
| calcSeCSC | Man page Source code |
| calcSeCif2_cpp | Source code |
| calcSeCox | Man page Source code |
| calcSeMinimalCSC_cpp | Source code |
| calcSeMinimalCox_cpp | Source code |
| calculateDelongCovarianceFast | Source code |
| categorize | Source code |
| coef.CauseSpecificCox | Man page Source code |
| coef.ate | Man page Source code |
| coef.riskRegression | Man page Source code |
| coef.wglm | Man page Source code |
| colCenter_cpp | Man page Source code |
| colCumSum | Man page Source code |
| colMultiply_cpp | Man page Source code |
| colScale_cpp | Man page Source code |
| compressData | Source code |
| computePerformance | Source code |
| confint.ate | Man page Source code |
| confint.influenceTest | Man page Source code |
| confint.predictCSC | Man page Source code |
| confint.predictCox | Man page Source code |
| confint.wglm | Man page Source code |
| confintBoot.ate | Source code |
| confintIID.ate | Source code |
| coxBaseEstimator | Man page Source code |
| coxBaseEstimator.GLMnet | Man page Source code |
| coxBaseEstimator.coxph | Man page Source code |
| coxBaseEstimator.phreg | Man page Source code |
| coxBaseEstimator.prodlim | Man page Source code |
| coxCenter | Man page Source code |
| coxCenter.coxph | Man page Source code |
| coxCenter.cph | Man page Source code |
| coxCenter.phreg | Man page Source code |
| coxFormula | Man page Source code |
| coxFormula.GLMnet | Man page Source code |
| coxFormula.coxph | Man page Source code |
| coxFormula.cph | Man page Source code |
| coxFormula.glm | Man page Source code |
| coxFormula.phreg | Man page Source code |
| coxFormula.prodlim | Man page Source code |
| coxLP | Man page Source code |
| coxLP.GLMnet | Man page Source code |
| coxLP.coxph | Man page Source code |
| coxLP.cph | Man page Source code |
| coxLP.phreg | Man page Source code |
| coxLP.prodlim | Man page Source code |
| coxModelFrame | Man page Source code |
| coxModelFrame.GLMnet | Man page Source code |
| coxModelFrame.coxph | Man page Source code |
| coxModelFrame.cph | Man page |
| coxModelFrame.phreg | Man page Source code |
| coxModelFrame.prodlim | Man page Source code |
| coxN | Man page Source code |
| coxN.CauseSpecificCox | Man page Source code |
| coxN.GLMnet | Man page Source code |
| coxN.coxph | Man page Source code |
| coxN.cph | Man page Source code |
| coxN.default | Man page Source code |
| coxN.glm | Man page Source code |
| coxN.phreg | Man page Source code |
| coxN.prodlim | Man page Source code |
| coxSpecial | Man page Source code |
| coxSpecial.GLMnet | Man page Source code |
| coxSpecial.coxph | Man page Source code |
| coxSpecial.cph | Man page Source code |
| coxSpecial.phreg | Man page Source code |
| coxSpecial.prodlim | Man page Source code |
| coxStrata | Man page Source code |
| coxStrata.GLMnet | Man page Source code |
| coxStrata.coxph | Man page Source code |
| coxStrata.cph | Man page Source code |
| coxStrata.phreg | Man page Source code |
| coxStrata.prodlim | Man page Source code |
| coxStrataLevel | Man page Source code |
| coxStrataLevel.coxph | Man page Source code |
| coxStrataLevel.cph | Man page Source code |
| coxStrataLevel.phreg | Man page Source code |
| coxStrataLevel.prodlim | Man page Source code |
| coxVarCov | Man page Source code |
| coxVarCov.coxph | Man page Source code |
| coxVarCov.cph | Man page Source code |
| coxVarCov.phreg | Man page Source code |
| coxVarCov.prodlim | Man page Source code |
| coxVariableName | Man page Source code |
| crossvalPerf.bootcv | Source code |
| crossvalPerf.loob.AUC | Source code |
| crossvalPerf.loob.Brier | Source code |
| decompressData | Source code |
| discreteRoot | Man page Source code |
| formula.wglm | Source code |
| getCensoringWeights | Source code |
| getComparisons | Source code |
| getIC0AUC | Source code |
| getInfluenceCurve.AUC | Source code |
| getInfluenceCurve.Brier | Source code |
| getInfluenceFunction.AUC.censoring.term | Source code |
| getInfluenceFunctionAUCKMCensoringTerm | Source code |
| getInfluenceFunctionBrierKMCensoringTerm | Source code |
| getLegendData | Source code |
| getNullModel | Source code |
| getPerformanceData | Source code |
| getQuantile | Source code |
| getResponse | Source code |
| getSeqForGrid | Source code |
| getSplitMethod | Man page Source code |
| getVcov | Source code |
| iid.wglm | Man page Source code |
| iidATE | Source code |
| iidATE2 | Source code |
| iidCox | Man page |
| iidCox.CauseSpecificCox | Man page Source code |
| iidCox.coxph | Man page Source code |
| iidCox.cph | Man page |
| iidCox.phreg | Man page |
| iidCox.prodlim | Man page |
| influenceTest | Man page |
| influenceTest.default | Man page Source code |
| influenceTest.list | Man page Source code |
| information.wglm | Man page Source code |
| ipcw | Man page Source code |
| ipcw.aalen | Man page |
| ipcw.cox | Man page Source code |
| ipcw.forest | Source code |
| ipcw.marginal | Man page Source code |
| ipcw.none | Man page Source code |
| ipcw.nonpar | Man page Source code |
| ipcw.rfsrc | Source code |
| is.iidCox | Man page |
| is.iidCox.CauseSpecificCox | Source code |
| is.iidCox.coxph | Source code |
| is.iidCox.default | Source code |
| model.matrix.cph | Man page Source code |
| model.matrix.phreg | Man page Source code |
| model.tables.ate | Man page Source code |
| model.tables.wglm | Man page Source code |
| nobs.CauseSpecificCox | Source code |
| nobs.multinom | Source code |
| nobs.wglm | Source code |
| pProcess_cpp | Source code |
| penalizedS3 | Man page Source code |
| plot.riskRegression | Man page Source code |
| plotAUC | Man page Source code |
| plotBrier | Man page Source code |
| plotCalibration | Man page Source code |
| plotEffects | Man page Source code |
| plotPredictRisk | Man page Source code |
| plotROC | Man page Source code |
| plotRisk | Man page Source code |
| predict.CauseSpecificCox | Man page Source code |
| predict.FGR | Man page Source code |
| predict.riskRegression | Man page Source code |
| predict.survfit | Source code |
| predict2melt | Source code |
| predict2plot | Source code |
| predictBig.CauseSpecificCox | Man page |
| predictCIF_cpp | Source code |
| predictCox | Man page Source code |
| predictCoxPL | Man page Source code |
| predictCoxWeights | Source code |
| predictRisk | Man page Source code |
| predictRisk.ARR | Man page Source code |
| predictRisk.BinaryTree | Man page Source code |
| predictRisk.CauseSpecificCox | Man page |
| predictRisk.CoxConfidential | Man page |
| predictRisk.FGR | Man page Source code |
| predictRisk.GLMnet | Man page Source code |
| predictRisk.Hal9001 | Man page Source code |
| predictRisk.SmcFcs | Source code |
| predictRisk.SuperPredictor | Man page Source code |
| predictRisk.aalen | Man page Source code |
| predictRisk.comprisk | Man page Source code |
| predictRisk.cox.aalen | Man page Source code |
| predictRisk.coxph | Man page Source code |
| predictRisk.coxph.penal | Man page Source code |
| predictRisk.cph | Man page |
| predictRisk.default | Man page Source code |
| predictRisk.double | Man page Source code |
| predictRisk.factor | Man page Source code |
| predictRisk.flexsurvreg | Man page Source code |
| predictRisk.formula | Man page Source code |
| predictRisk.gbm | Man page Source code |
| predictRisk.glm | Man page Source code |
| predictRisk.integer | Man page Source code |
| predictRisk.lrm | Man page Source code |
| predictRisk.matrix | Man page Source code |
| predictRisk.multinom | Man page Source code |
| predictRisk.numeric | Man page Source code |
| predictRisk.pecCforest | Man page |
| predictRisk.pecCtree | Man page |
| predictRisk.penfitS3 | Man page Source code |
| predictRisk.prodlim | Man page Source code |
| predictRisk.psm | Man page Source code |
| predictRisk.randomForest | Man page Source code |
| predictRisk.ranger | Man page Source code |
| predictRisk.rfsrc | Man page Source code |
| predictRisk.riskRegression | Man page Source code |
| predictRisk.rpart | Man page Source code |
| predictRisk.selectCox | Man page Source code |
| predictRisk.singleEventCB | Man page Source code |
| predictRisk.survfit | Man page Source code |
| predictRisk.wglm | Man page Source code |
| print.CauseSpecificCox | Man page Source code |
| print.FGR | Man page Source code |
| print.GLMnet | Man page Source code |
| print.IPA | Man page Source code |
| print.Score | Man page Source code |
| print.ate | Man page Source code |
| print.influenceTest | Man page Source code |
| print.predictCSC | Man page Source code |
| print.predictCox | Man page Source code |
| print.riskRegression | Man page Source code |
| print.scoreAUC | Source code |
| print.scoreBrier | Source code |
| print.subjectWeights | Man page Source code |
| print.synth_code | Man page Source code |
| print.wglm | Source code |
| quantileCI | Source code |
| quantileProcess_cpp | Source code |
| reconstructData | Man page Source code |
| riskLevelPlot | Man page Source code |
| riskQuantile.binary | Source code |
| riskQuantile.competing.risks | Source code |
| riskQuantile.survival | Source code |
| riskRegression | Man page Source code |
| riskRegression-package | Man page |
| riskRegression.options | Man page Source code |
| rowCenter_cpp | Man page Source code |
| rowCumSum | Man page Source code |
| rowMultiply_cpp | Man page Source code |
| rowPaste | Man page Source code |
| rowScale_cpp | Man page Source code |
| rowSumsCrossprod | Man page Source code |
| rsquared | Man page |
| rsquared.CauseSpecificCox | Man page |
| rsquared.coxph | Man page |
| rsquared.default | Man page |
| rsquared.glm | Man page |
| sampleData | Man page Source code |
| sampleMaxProcess_cpp | Source code |
| saveCoxConfidential | Man page Source code |
| saveSynth | Man page Source code |
| score.wglm | Man page Source code |
| selectCox | Man page Source code |
| selectJump | Man page Source code |
| simActiveSurveillance | Man page Source code |
| simMelanoma | Man page Source code |
| simPBC | Man page Source code |
| simsynth | Man page Source code |
| splitStrataVar | Man page Source code |
| subjectWeights | Man page Source code |
| subjectWeights.aalen | Man page |
| subjectWeights.cox | Man page Source code |
| subjectWeights.forest | Source code |
| subjectWeights.km | Man page |
| subjectWeights.marginal | Man page Source code |
| subjectWeights.none | Man page Source code |
| subjectWeights.nonpar | Man page Source code |
| subsetIndex | Man page |
| subsetIndex.default | Man page Source code |
| subsetIndex.matrix | Man page Source code |
| summary.FGR | Man page Source code |
| summary.Score | Man page Source code |
| summary.ate | Man page Source code |
| summary.riskRegression | Man page Source code |
| summary.wglm | Source code |
| synthesize | Man page Source code |
| synthesize.formula | Man page Source code |
| synthesize.lvm | Man page Source code |
| terms.phreg | Man page Source code |
| transformCI | Source code |
| transformCIBP | Man page Source code |
| transformIID | Source code |
| transformSE | Source code |
| transformT | Source code |
| vcov.ate | Man page Source code |
| vcov.wglm | Man page Source code |
| weightedAverageIFCumhazard_cpp | Source code |
| weights.wglm | Man page Source code |
| wglm | Man page Source code |
