analysisEachCluster: Perform synteny analysis for identified clusters

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

Perform synteny analysis for identified clusters

Description

This function performs synteny analysis for clusters identified by hierarchical clustering.

Usage

analysisEachCluster(
  segmented_file,
  segmented_anchorpoints_file,
  genes_file,
  cluster_info_file,
  identified_cluster_file,
  hcheight = 0.3
)

Arguments

segmented_file	The path to the segmented chromosome file.
segmented_anchorpoints_file	The path to the segmented anchorpoints file.
genes_file	genes.txt created by i-ADHoRe.
cluster_info_file	The path to the clustering information file.
identified_cluster_file	The path to the output file for identified clusters.
hcheight	The cutoff height for cluster identification (default: 0.3).

Value

A list containing information about identified clusters and their p-values.

shinyWGD documentation built on April 4, 2025, 2:28 a.m.