computing_depth: Compute the Depth of Anchored Points

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

Compute the Depth of Anchored Points

Description

This function calculates the depth of anchored points based on the provided parameters.

Usage

computing_depth(
  anchorpoint_ks_file,
  multiplicon_id,
  selected_query_chr,
  selected_subject_chr = NULL
)

Arguments

anchorpoint_ks_file	The file containing anchorpoint and Ks data.
multiplicon_id	The ID of the multiplicon to consider.
selected_query_chr	A list of selected query chromosomes.
selected_subject_chr	A list of selected subject chromosomes (optional).

Value

A list containing depth data frames, including "query_depth" and "subject_depth" if subject chromosomes are specified, or "depth" if not.

shinyWGD documentation built on April 4, 2025, 2:28 a.m.