obtain_mean_ks_for_each_multiplicon: Compute the Mean of Ks values for Each Multiplicon

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

Compute the Mean of Ks values for Each Multiplicon

Description

This function takes as input a multiplicon file, an anchorpoint file, Ks values, and other relevant information. It calculates the mean of Ks values for each multiplicon and associates them with the corresponding data.

Usage

obtain_mean_ks_for_each_multiplicon(
  multiplicon_file,
  anchorpoint_file,
  species1,
  ks_file,
  outfile,
  anchorpointout_file,
  species2 = NULL
)

Arguments

multiplicon_file	A file containing multiplicon information.
anchorpoint_file	A file containing anchorpoints information with columns like geneX, geneY, and other relevant data.
species1	The name of the first species.
ks_file	A file containing Ks values.
outfile	The output file where the results will be saved.
anchorpointout_file	The output file for anchorpoint data with Ks values.
species2	(Optional) The name of the second species. Specify this parameter and ks_file if working with two species.

Value

None. The function saves the results to the specified outfile and anchorpointout_file.

shinyWGD documentation built on April 4, 2025, 2:28 a.m.