relativeRate: relativeRate

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

relativeRate

Description

Compute relative rates using input data files and statistical computations.

Usage

relativeRate(
  ksv2out_1_file,
  ksv2out_2_file,
  ksv_between_file,
  KsMax,
  low = 0.025,
  up = 0.975,
  bs = 1000
)

Arguments

ksv2out_1_file	A character string specifying the path to the first input data file.
ksv2out_2_file	A character string specifying the path to the second input data file.
ksv_between_file	A character string specifying the path to the third input data file.
KsMax	A numeric value representing a maximum threshold for Ks values.
low	A numeric value specifying the lower quantile for bootstrapping. Default is 0.025.
up	A numeric value specifying the upper quantile for bootstrapping. Default is 0.975.
bs	An integer specifying the number of bootstrap iterations. Default is 1000.

Value

A list containing computed relative rates and their confidence intervals.

shinyWGD documentation built on April 4, 2025, 2:28 a.m.