create_ksrates_configure_file_based_on_table: Create Ksrates Configuration File Based on Data Table

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

Create Ksrates Configuration File Based on Data Table

Description

This function generates a Ksrates configuration file based on a data table and other parameters.

Usage

create_ksrates_configure_file_based_on_table(
  data_table,
  focal_species,
  newick_tree_file,
  ksrates_conf_file,
  species_info_file,
  working_wd
)

Arguments

data_table	The data table containing information about species, proteomes, and GFF files.
focal_species	The name of the focal species.
newick_tree_file	The path to the Newick tree file.
ksrates_conf_file	The path to the Ksrates configuration file to be generated.
species_info_file	The path to the species information file.
working_wd	A character string specifying the working directory to be used.

shinyWGD documentation built on April 4, 2025, 2:28 a.m.