obtain_coordiantes_for_segments: Obtain coordinates for segments in a comparison

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

Obtain coordinates for segments in a comparison

Description

This function retrieves the coordinates for segments in a comparison based on the provided parameters.

Usage

obtain_coordiantes_for_segments(
  seg_file,
  sp1,
  gff_file1,
  out_file,
  sp2 = NULL,
  gff_file2 = NULL
)

Arguments

seg_file	The file containing segment data.
sp1	The species name for the first genome.
gff_file1	The GFF file for the first genome.
out_file	The output file to store the merged position data.
sp2	The species name for the second genome (optional).
gff_file2	The GFF file for the second genome (optional).

Value

NULL (the results are saved in the output file).

shinyWGD documentation built on April 4, 2025, 2:28 a.m.