cluster_synteny: Cluster Synteny Data and Generate Trees

In shinyWGD: 'Shiny' Application for Whole Genome Duplication Analysis

Cluster Synteny Data and Generate Trees

Description

This function clusters synteny data based on calculated p-values and generates trees for both column-based and row-based clustering. It then saves the cluster information and trees to output files.

Usage

cluster_synteny(
  segmented_file,
  segmented_anchorpoints_file,
  genes_file,
  out_file
)

Arguments

segmented_file	A character string specifying the file path for segmented data.
segmented_anchorpoints_file	A character string specifying the file path for segmented anchorpoints.
genes_file	A character string specifying the file path for genes information created by i-ADHoRe.
out_file	A character string specifying the output file path for saving cluster information.

Value

NULL (output files are generated with the specified information).

shinyWGD documentation built on April 4, 2025, 2:28 a.m.