hclust_haystack | R Documentation |
Function for hierarchical clustering of genes according to their expression distribution in 2D or multi-dimensional space
hclust_haystack(
x,
expression,
grid.coordinates,
hclust.method = "ward.D",
cor.method = "spearman",
...
)
## S3 method for class 'matrix'
hclust_haystack(
x,
expression,
grid.coordinates,
hclust.method = "ward.D",
cor.method = "spearman",
...
)
## S3 method for class 'data.frame'
hclust_haystack(
x,
expression,
grid.coordinates,
hclust.method = "ward.D",
cor.method = "spearman",
...
)
x |
a matrix or other object from which coordinates of cells can be extracted. |
expression |
expression matrix. |
grid.coordinates |
coordinates of the grid points. |
hclust.method |
method used with hclust. |
cor.method |
method used with cor. |
... |
further parameters passed down to methods. |
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