hclust_haystack | R Documentation |
Function for hierarchical clustering of genes according to their expression distribution in 2D or multi-dimensional space
hclust_haystack( x, expression, grid.coordinates, hclust.method = "ward.D", cor.method = "spearman", ... ) ## S3 method for class 'matrix' hclust_haystack( x, expression, grid.coordinates, hclust.method = "ward.D", cor.method = "spearman", ... ) ## S3 method for class 'data.frame' hclust_haystack( x, expression, grid.coordinates, hclust.method = "ward.D", cor.method = "spearman", ... )
x |
a matrix or other object from which coordinates of cells can be extracted. |
expression |
expression matrix. |
grid.coordinates |
coordinates of the grid points. |
hclust.method |
method used with hclust. |
cor.method |
method used with cor. |
... |
further parameters passed down to methods. |
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