View source: R/haystack_visualization.R
plot_gene_haystack_raw | R Documentation |
Visualizing the detection/expression of a gene in a 2D plot
plot_gene_haystack_raw( x, y, gene, expression, detection = NULL, high.resolution = FALSE, point.size = 1, order.by.signal = FALSE )
x |
x-axis coordinates of cells in a 2D representation (e.g. resulting from PCA or t-SNE) |
y |
y-axis coordinates of cells in a 2D representation |
gene |
name of a gene that is present in the input expression data, or a numerical index |
expression |
a logical/numerical matrix showing detection/expression of genes (rows) in cells (columns) |
detection |
an optional logical matrix showing detection of genes (rows) in cells (columns). If left as NULL, the density distribution of the gene is not plotted. |
high.resolution |
logical (default: FALSE). If set to TRUE, the density plot will be of a higher resolution |
point.size |
numerical value to set size of points in plot. Default is 1. |
order.by.signal |
If TRUE, cells with higher signal will be put on the foreground in the plot. Default is FALSE. |
A plot
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.