View source: R/haystack_highD.R
get_D_KL_highD | R Documentation |
Calculates the Kullback-Leibler divergence between distributions for the high-dimensional version of haystack().
get_D_KL_highD(classes, density.contributions, reference.prob, pseudo = 0)
classes |
A logical vector. Values are T is the gene is expressed in a cell, F is not. |
density.contributions |
A matrix of density contributions of each cell (rows) to each center point (columns). |
reference.prob |
A reference distribution to calculate the divergence against. |
pseudo |
A pseudocount, used to avoid log(0) problems. |
A numerical value, the Kullback-Leibler divergence
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