Files in singleCellHaystack
A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data
MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/sparse.R
R/haystack_highD.R
R/haystack_clustering.R
R/debug.R
R/haystack_IO.R
R/data.R
R/haystack_clustering_highD.R
R/s3.R
R/haystack_visualization.R
R/singleCellHaystack-package.R
R/randomization.R
R/haystack.R
R/haystack_continuous.R
inst/CITATION
inst/doc/a01_toy_example.Rmd
inst/doc/a01_toy_example.R
inst/doc/a01_toy_example.html
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-haystack_sparse.R
tests/testthat/test-extract_row.R
tests/testthat/test-haystack_continuous.R
vignettes/a01_toy_example.Rmd
vignettes/examples/a08_gene_clustering.Rmd
vignettes/examples/a02_example_scRNAseq.Rmd
vignettes/examples/a03_example_spatial_visium.Rmd
vignettes/examples/a05_moca_100k.Rmd
vignettes/examples/a04_example_spatial_slideseqV2.Rmd
vignettes/examples/a06_pseudotime.Rmd
vignettes/examples/a07_gene_sets.Rmd
vignettes/examples/figures/a06-plot_genes_1-1.png
vignettes/examples/figures/a05-plot_results-1.png
vignettes/examples/figures/a06-plot_cells_4-1.png
vignettes/examples/figures/a06-plot_cells_3-1.png
vignettes/examples/figures/a06-plot_pca-1.png
vignettes/examples/figures/a06-plot_haystack_1-1.png
vignettes/examples/figures/a06-plot_haystack_2-1.png
vignettes/examples/figures/a06-plot_genes_2-2.png
vignettes/examples/figures/a06-plot_cells_2-1.png
vignettes/examples/figures/a06-plot_cells_1-1.png
vignettes/examples/figures/a06-plot_haystack_3-1.png
vignettes/examples/figures/a06-plot_cells_2-2.png
vignettes/examples/figures/a06-plot_genes_2-1.png
vignettes/examples/figures/a05-plot_dim-1.png
vignettes/examples/figures/a06-plot_cells_5-1.png
vignettes/examples/figures/a06-plot_haystack_1-2.png
data/toy.rda
man/haystack_continuous_highD.Rd
man/haystack_2D.Rd
man/kmeans_haystack_highD.Rd
man/get_grid_points.Rd
man/hclust_haystack_highD.Rd
man/default_bandwidth.nrd.Rd
man/kmeans_haystack_raw.Rd
man/hclust_haystack.Rd
man/kde2d_faster.Rd
man/dat.tsne.Rd
man/get_log_p_D_KL.Rd
man/get_D_KL_highD.Rd
man/plot_gene_set_haystack_raw.Rd
man/write_haystack.Rd
man/get_reference.Rd
man/plot_gene_set_haystack.Rd
man/dat.expression.Rd
man/get_D_KL.Rd
man/hclust_haystack_raw.Rd
man/get_D_KL_continuous_highD.Rd
man/get_parameters_haystack.Rd
man/kmeans_haystack.Rd
man/plot_gene_haystack_raw.Rd
man/singleCellHaystack-package.Rd
man/extract_row_lgRMatrix.Rd
man/get_dist_two_sets.Rd
man/get_density.Rd
man/haystack_highD.Rd
man/get_log_p_D_KL_continuous.Rd
man/get_euclidean_distance.Rd
man/read_haystack.Rd
man/plot_rand_fit.Rd
man/haystack.Rd
man/show_result_haystack.Rd
man/extract_row_dgRMatrix.Rd
man/plot_gene_haystack.Rd
man/figures/README-example3-1.png
man/figures/README-example5-1.png
