Files in singleCellHaystack
Finding Needles (=differentially Expressed Genes) in Haystacks (=single Cell Data)

MD5
NEWS.md
NAMESPACE
DESCRIPTION
LICENSE
R/sparse.R R/haystack_highD.R R/haystack_clustering.R R/haystack_IO.R R/data.R R/haystack_clustering_highD.R R/s3.R R/haystack_visualization.R R/singleCellHaystack-package.R R/haystack.R
inst/CITATION
inst/doc/a01_toy_example.Rmd inst/doc/a01_toy_example.R
inst/doc/a01_toy_example.html
build/vignette.rds
tests/testthat.R tests/testthat/test-get_d_kl.R tests/testthat/test-haystack_sparse.R tests/testthat/test-extract_row.R tests/testthat/test-get_parameters_haystack.R tests/testthat/test-haystack.R tests/testthat/test-kde2d_faster.R vignettes/a01_toy_example.Rmd vignettes/examples/a07_example_tsne2D_advanced.Rmd vignettes/examples/a06_example_tsne2D_default.Rmd vignettes/examples/a03_example_highD_advanced.Rmd vignettes/examples/a05_moca_100k.Rmd vignettes/examples/a04_example_spatial_transcriptomics.Rmd vignettes/examples/a02_example_highD_default.Rmd
vignettes/examples/figure/plot_dim-1.png
vignettes/examples/figure/plot_results-1.png
data/toy.rda
man/haystack_2D.Rd man/kmeans_haystack_highD.Rd man/get_grid_points.Rd man/hclust_haystack_highD.Rd man/default_bandwidth.nrd.Rd man/kmeans_haystack_raw.Rd man/hclust_haystack.Rd man/kde2d_faster.Rd man/dat.tsne.Rd man/get_log_p_D_KL.Rd man/get_D_KL_highD.Rd man/plot_gene_set_haystack_raw.Rd man/write_haystack.Rd man/get_reference.Rd man/plot_gene_set_haystack.Rd man/dat.expression.Rd man/get_D_KL.Rd man/hclust_haystack_raw.Rd man/get_parameters_haystack.Rd man/kmeans_haystack.Rd man/plot_gene_haystack_raw.Rd man/singleCellHaystack-package.Rd man/extract_row_lgRMatrix.Rd man/get_dist_two_sets.Rd man/get_density.Rd man/haystack_highD.Rd man/get_euclidean_distance.Rd man/read_haystack.Rd man/haystack.Rd man/show_result_haystack.Rd man/extract_row_dgRMatrix.Rd man/plot_gene_haystack.Rd
man/figures/README-example3-1.png
man/figures/README-example5-1.png
singleCellHaystack documentation built on March 28, 2021, 9:12 a.m.