API for singleCellHaystack
A Universal Differential Expression Prediction Tool for Single-Cell and Spatial Genomics Data
| Global functions | |
|---|---|
| dat.expression | Man page |
| dat.tsne | Man page |
| default_bandwidth.nrd | Man page Source code |
| extract_row_dgRMatrix | Man page Source code |
| extract_row_dgRMatrix_as_sparse | Source code |
| extract_row_lgRMatrix | Man page Source code |
| get_D_KL | Man page Source code |
| get_D_KL_continuous_highD | Man page Source code |
| get_D_KL_continuous_highD_SPARSE | Source code |
| get_D_KL_highD | Man page Source code |
| get_density | Man page Source code |
| get_dist_two_sets | Man page Source code |
| get_euclidean_distance | Man page Source code |
| get_grid_points | Man page Source code |
| get_log_p_D_KL | Man page Source code |
| get_log_p_D_KL_continuous | Man page Source code |
| get_model_cv_bs | Source code |
| get_model_cv_ns | Source code |
| get_parameters_haystack | Man page Source code |
| get_reference | Man page Source code |
| haystack | Man page Source code |
| haystack.Seurat | Man page Source code |
| haystack.SingleCellExperiment | Man page Source code |
| haystack.data.frame | Man page Source code |
| haystack.matrix | Man page Source code |
| haystack_2D | Man page Source code |
| haystack_continuous_highD | Man page Source code |
| haystack_highD | Man page Source code |
| hclust_haystack | Man page Source code |
| hclust_haystack.data.frame | Man page Source code |
| hclust_haystack.matrix | Man page Source code |
| hclust_haystack_continuous | Source code |
| hclust_haystack_highD | Man page Source code |
| hclust_haystack_raw | Man page Source code |
| kde2d_faster | Man page |
| kmeans_haystack | Man page Source code |
| kmeans_haystack.data.frame | Man page Source code |
| kmeans_haystack.matrix | Man page Source code |
| kmeans_haystack_continuous | Source code |
| kmeans_haystack_highD | Man page Source code |
| kmeans_haystack_raw | Man page Source code |
| plot_compare_ranks | Source code |
| plot_gene_haystack | Man page Source code |
| plot_gene_haystack.Seurat | Man page Source code |
| plot_gene_haystack.SingleCellExperiment | Man page Source code |
| plot_gene_haystack.data.frame | Man page Source code |
| plot_gene_haystack.matrix | Man page Source code |
| plot_gene_haystack_raw | Man page Source code |
| plot_gene_set_haystack | Man page Source code |
| plot_gene_set_haystack.Seurat | Man page Source code |
| plot_gene_set_haystack.SingleCellExperiment | Man page Source code |
| plot_gene_set_haystack.data.frame | Man page Source code |
| plot_gene_set_haystack.matrix | Man page Source code |
| plot_gene_set_haystack_raw | Man page Source code |
| plot_rand_fit | Man page Source code |
| plot_rand_fit.haystack | Man page Source code |
| prepare_clustering | Source code |
| read_haystack | Man page |
| show_result_haystack | Man page Source code |
| show_result_haystack.haystack | Man page Source code |
| singleCellHaystack | Man page |
| singleCellHaystack-package | Man page |
| write_haystack | Man page |
