Files in slendr
A Simulation Framework for Spatiotemporal Population Genetics
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/visualization.R
R/print.R
R/shiny.R
R/geometry.R
R/tree-sequences.R
R/slendr-package.R
R/zzz.R
R/compilation.R
R/tspop.R
R/interface.R
R/engines.R
R/utils.R
inst/doc/vignette-00-installation.html
inst/doc/vignette-03-interactions.Rmd
inst/doc/vignette-07-backends.Rmd
inst/doc/vignette-00-installation.Rmd
inst/doc/vignette-09-paper.R
inst/doc/vignette-02-grid-model.html
inst/doc/vignette-04-nonspatial-models.R
inst/doc/vignette-05-tree-sequences.Rmd
inst/doc/vignette-10-tracts.R
inst/doc/vignette-06-locations.html
inst/doc/vignette-01-tutorial.html
inst/doc/vignette-01-tutorial.R
inst/doc/vignette-02-grid-model.R
inst/doc/vignette-05-tree-sequences.html
inst/doc/vignette-07-backends.R
inst/doc/vignette-08-nonslendr-tskit.Rmd
inst/doc/vignette-06-locations.Rmd
inst/doc/vignette-09-paper.Rmd
inst/doc/vignette-08-nonslendr-tskit.html
inst/doc/vignette-09-paper.html
inst/doc/vignette-10-tracts.html
inst/doc/vignette-03-interactions.html
inst/doc/vignette-02-grid-model.Rmd
inst/doc/vignette-05-tree-sequences.R
inst/doc/vignette-10-tracts.Rmd
inst/doc/vignette-04-nonspatial-models.html
inst/doc/vignette-06-locations.R
inst/doc/vignette-01-tutorial.Rmd
inst/doc/vignette-08-nonslendr-tskit.R
inst/doc/vignette-03-interactions.R
inst/doc/vignette-07-backends.html
inst/doc/vignette-04-nonspatial-models.Rmd
inst/extdata/models/introgression_msprime.trees
inst/extdata/models/msprime.trees
inst/extdata/models/introgression_slim.trees
inst/extdata/models/introgression/script.slim
inst/extdata/models/introgression/checksums.tsv
inst/extdata/models/introgression/ranges.rds
inst/extdata/models/introgression/geneflow.tsv
inst/extdata/models/introgression/description.txt
inst/extdata/models/introgression/populations.tsv
inst/extdata/models/introgression/length.txt
inst/extdata/models/introgression/generation_time.txt
inst/extdata/models/introgression/direction.txt
inst/extdata/models/introgression/orig_length.txt
inst/extdata/models/introgression/script.py
inst/naturalearth/ne_110m_land.zip
inst/scripts/script.slim
inst/scripts/script.py
inst/scripts/__pycache__/script.cpython-311.pyc
inst/scripts/__pycache__/script.cpython-312.pyc
inst/scripts/__pycache__/script.cpython-38.pyc
inst/pylib/pylib.py
build/vignette.rds
build/slendr-00build.log
tests/testthat.R
tests/testthat/f4_Windows.tsv.gz
tests/testthat/distances.tsv.gz
tests/testthat/f4_Linux.tsv.gz
tests/testthat/manual_ts_nodes+edges.py
tests/testthat/map.rds
tests/testthat/test-utililites.R
tests/testthat/test-naturalearth.R
tests/testthat/test-manual-ts.R
tests/testthat/test-ts.R
tests/testthat/afs_Darwin.tsv.gz
tests/testthat/test-engines.R
tests/testthat/test-pure-slim-vs-slendr.R
tests/testthat/test-msprime-metadata.R
tests/testthat/test-abstract-vs-real-landscapes.R
tests/testthat/test-pure-msprime-vs-slendr.R
tests/testthat/test-trees.R
tests/testthat/test-simulation-runs.R
tests/testthat/test-ts-pure-spatial.R
tests/testthat/f4ratio_Darwin.tsv.gz
tests/testthat/test-geometrical-operations.R
tests/testthat/test-ibd-squashing.R
tests/testthat/manual_ts_nodes+edges+inds.py
tests/testthat/f4ratio_Linux.tsv.gz
tests/testthat/test-ts-pure-nonspatial.R
tests/testthat/test-nonserialized.R
tests/testthat/test-runners.R
tests/testthat/test-resizes-locked.R
tests/testthat/test-geneflow.R
tests/testthat/test-dynamics.R
tests/testthat/test-ts-ancestors-descendants.R
tests/testthat/afs_Windows.tsv.gz
tests/testthat/manual_ts_nodes+edges+inds+pops.py
tests/testthat/test-serialization.R
tests/testthat/test-compilation.R
tests/testthat/test-interaction-changes.R
tests/testthat/test-sampling.R
tests/testthat/f4_Darwin.tsv.gz
tests/testthat/test-ibd.R
tests/testthat/manual_ts_nodes+edges+inds+pops+muts.py
tests/testthat/helper-functions.R
tests/testthat/test-msprime.R
tests/testthat/test-coordinate-conversions.R
tests/testthat/f4ratio_Windows.tsv.gz
tests/testthat/test-interactive-elements.R
tests/testthat/test-tspop.R
tests/testthat/test-msprime-geneflow.R
tests/testthat/test-time-direction.R
tests/testthat/test-resizes.R
tests/testthat/afs_Linux.tsv.gz
tests/testthat/test-population.R
vignettes/vignette-03-interactions.Rmd
vignettes/vignette-07-backends.Rmd
vignettes/vignette-00-installation.Rmd
vignettes/vignette-05-tree-sequences.Rmd
vignettes/vignette-08-nonslendr-tskit.Rmd
vignettes/vignette-06-locations.Rmd
vignettes/vignette-09-paper.Rmd
vignettes/vignette-02-grid-model.Rmd
vignettes/vignette-10-tracts.Rmd
vignettes/vignette-01-tutorial.Rmd
vignettes/vignette-04-nonspatial-models.Rmd
vignettes/images/demographic_models.jpg
vignettes/images/geneflow_graph.jpg
vignettes/images/shiny_maps.jpg
vignettes/images/shiny_graph.jpg
vignettes/images/original_ex4.png
vignettes/images/f4_tree.jpg
vignettes/images/haak_map.jpg
man/ts_simplify.Rd
man/ts_genotypes.Rd
man/ts_vcf.Rd
man/ts_names.Rd
man/ts_table.Rd
man/slendr.Rd
man/print.slendr_ts.Rd
man/ts_recapitate.Rd
man/ts_eigenstrat.Rd
man/get_env.Rd
man/ts_segregating.Rd
man/animate_model.Rd
man/read_model.Rd
man/ts_tajima.Rd
man/ts_descendants.Rd
man/slim.Rd
man/move.Rd
man/join.Rd
man/set_range.Rd
man/ts_phylo.Rd
man/ts_ancestors.Rd
man/ts_nodes.Rd
man/ts_save.Rd
man/compile_model.Rd
man/schedule_sampling.Rd
man/ts_divergence.Rd
man/population.Rd
man/ts_tracts.Rd
man/ts_ibd.Rd
man/ts_metadata.Rd
man/explore_model.Rd
man/expand_range.Rd
man/gene_flow.Rd
man/ts_samples.Rd
man/ts_coalesced.Rd
man/check_dependencies.Rd
man/area.Rd
man/resize.Rd
man/as.phylo.slendr_phylo.Rd
man/print.slendr_pop.Rd
man/distance.Rd
man/ts_draw.Rd
man/reproject.Rd
man/plot_model.Rd
man/ts_afs.Rd
man/pipe.Rd
man/ts_load.Rd
man/ts_mutate.Rd
man/ts_fst.Rd
man/plot_map.Rd
man/world.Rd
man/clear_env.Rd
man/ts_tree.Rd
man/msprime.Rd
man/shrink_range.Rd
man/summary.slendr_nodes.Rd
man/set_dispersal.Rd
man/region.Rd
man/ts_f4ratio.Rd
man/ts_edges.Rd
man/init_env.Rd
man/overlap.Rd
man/setup_env.Rd
man/subtract.Rd
man/check_env.Rd
man/ts_diversity.Rd
man/examples/spatial_functions.R
man/examples/model_definition.R
