Files in slendr
A Simulation Framework for Spatiotemporal Population Genetics

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
LICENSE
R/visualization.R R/print.R R/shiny.R R/geometry.R R/tree-sequences.R R/slendr-package.R R/cli-runners.R R/zzz.R R/compilation.R R/interface.R R/engines.R R/utils.R
inst/doc/vignette-00-installation.html
inst/doc/vignette-03-interactions.Rmd inst/doc/vignette-07-backends.Rmd inst/doc/vignette-00-installation.Rmd inst/doc/vignette-09-paper.R
inst/doc/vignette-02-grid-model.html
inst/doc/vignette-04-nonspatial-models.R inst/doc/vignette-05-tree-sequences.Rmd
inst/doc/vignette-06-locations.html
inst/doc/vignette-01-tutorial.html
inst/doc/vignette-01-tutorial.R inst/doc/vignette-02-grid-model.R
inst/doc/vignette-05-tree-sequences.html
inst/doc/vignette-07-backends.R inst/doc/vignette-08-nonslendr-tskit.Rmd inst/doc/vignette-06-locations.Rmd inst/doc/vignette-09-paper.Rmd
inst/doc/vignette-08-nonslendr-tskit.html
inst/doc/vignette-09-paper.html
inst/doc/vignette-03-interactions.html
inst/doc/vignette-02-grid-model.Rmd inst/doc/vignette-05-tree-sequences.R
inst/doc/vignette-04-nonspatial-models.html
inst/doc/vignette-06-locations.R inst/doc/vignette-01-tutorial.Rmd inst/doc/vignette-08-nonslendr-tskit.R inst/doc/vignette-03-interactions.R
inst/doc/vignette-07-backends.html
inst/doc/vignette-04-nonspatial-models.Rmd
inst/extdata/models/introgression.trees
inst/extdata/models/msprime.trees
inst/extdata/models/introgression/script.slim
inst/extdata/models/introgression/checksums.tsv
inst/extdata/models/introgression/ranges.rds
inst/extdata/models/introgression/geneflow.tsv
inst/extdata/models/introgression/description.txt
inst/extdata/models/introgression/populations.tsv
inst/extdata/models/introgression/length.txt
inst/extdata/models/introgression/generation_time.txt
inst/extdata/models/introgression/direction.txt
inst/extdata/models/introgression/orig_length.txt
inst/extdata/models/introgression/script.py
inst/naturalearth/ne_110m_land.zip
inst/scripts/script.slim
inst/scripts/script.py
inst/scripts/__pycache__/script.cpython-311.pyc
inst/scripts/__pycache__/script.cpython-38.pyc
inst/pylib/pylib.py
build/vignette.rds
build/slendr-00build.log
tests/testthat.R
tests/testthat/distances.tsv.gz
tests/testthat/f4_Linux.tsv.gz
tests/testthat/manual_ts_nodes+edges.py
tests/testthat/map.rds
tests/testthat/test-utililites.R tests/testthat/test-naturalearth.R tests/testthat/test-manual-ts.R tests/testthat/test-ts.R
tests/testthat/afs_Darwin.tsv.gz
tests/testthat/test-engines.R tests/testthat/test-pure-slim-vs-slendr.R tests/testthat/test-msprime-metadata.R tests/testthat/test-abstract-vs-real-landscapes.R tests/testthat/test-pure-msprime-vs-slendr.R tests/testthat/test-trees.R tests/testthat/test-simulation-runs.R tests/testthat/test-ts-pure-spatial.R
tests/testthat/f4ratio_Darwin.tsv.gz
tests/testthat/test-geometrical-operations.R tests/testthat/test-ibd-squashing.R
tests/testthat/manual_ts_nodes+edges+inds.py
tests/testthat/f4ratio_Linux.tsv.gz
tests/testthat/test-ts-pure-nonspatial.R tests/testthat/test-nonserialized.R tests/testthat/test-runners.R tests/testthat/test-resizes-locked.R tests/testthat/test-geneflow.R tests/testthat/test-dynamics.R tests/testthat/test-ts-ancestors-descendants.R
tests/testthat/manual_ts_nodes+edges+inds+pops.py
tests/testthat/test-serialization.R tests/testthat/test-compilation.R tests/testthat/test-interaction-changes.R tests/testthat/test-sampling.R
tests/testthat/f4_Darwin.tsv.gz
tests/testthat/test-ibd.R
tests/testthat/manual_ts_nodes+edges+inds+pops+muts.py
tests/testthat/helper-functions.R tests/testthat/test-msprime.R tests/testthat/test-coordinate-conversions.R tests/testthat/test-interactive-elements.R tests/testthat/test-msprime-geneflow.R tests/testthat/test-time-direction.R tests/testthat/test-resizes.R
tests/testthat/afs_Linux.tsv.gz
tests/testthat/test-population.R vignettes/vignette-03-interactions.Rmd vignettes/vignette-07-backends.Rmd vignettes/vignette-00-installation.Rmd vignettes/vignette-05-tree-sequences.Rmd vignettes/vignette-08-nonslendr-tskit.Rmd vignettes/vignette-06-locations.Rmd vignettes/vignette-09-paper.Rmd vignettes/vignette-02-grid-model.Rmd vignettes/vignette-01-tutorial.Rmd vignettes/vignette-04-nonspatial-models.Rmd
vignettes/images/demographic_models.jpg
vignettes/images/geneflow_graph.jpg
vignettes/images/shiny_maps.jpg
vignettes/images/shiny_graph.jpg
vignettes/images/f4_tree.jpg
vignettes/images/haak_map.jpg
man/ts_simplify.Rd man/ts_genotypes.Rd man/ts_vcf.Rd man/ts_names.Rd man/ts_table.Rd man/slendr.Rd man/print.slendr_ts.Rd man/ts_recapitate.Rd man/ts_eigenstrat.Rd man/ts_segregating.Rd man/animate_model.Rd man/read_model.Rd man/ts_tajima.Rd man/ts_descendants.Rd man/slim.Rd man/move.Rd man/join.Rd man/set_range.Rd man/ts_phylo.Rd man/ts_ancestors.Rd man/ts_nodes.Rd man/ts_save.Rd man/compile_model.Rd man/schedule_sampling.Rd man/ts_divergence.Rd man/population.Rd man/ts_ibd.Rd man/ts_metadata.Rd man/explore_model.Rd man/expand_range.Rd man/gene_flow.Rd man/ts_samples.Rd man/ts_coalesced.Rd man/check_dependencies.Rd man/area.Rd man/resize.Rd man/as.phylo.slendr_phylo.Rd man/print.slendr_pop.Rd man/distance.Rd man/ts_draw.Rd man/reproject.Rd man/plot_model.Rd man/ts_afs.Rd man/pipe.Rd man/ts_load.Rd man/ts_mutate.Rd man/ts_fst.Rd man/plot_map.Rd man/world.Rd man/clear_env.Rd man/ts_tree.Rd man/msprime.Rd man/shrink_range.Rd man/summary.slendr_nodes.Rd man/set_dispersal.Rd man/region.Rd man/ts_f4ratio.Rd man/ts_edges.Rd man/init_env.Rd man/overlap.Rd man/setup_env.Rd man/subtract.Rd man/check_env.Rd man/ts_diversity.Rd man/examples/spatial_functions.R man/examples/model_definition.R
slendr documentation built on Aug. 8, 2023, 5:08 p.m.