Extract SS3 simulation output
This high level function extracts results from SS3 model runs. Give it a directory which contains directories for different "scenario" runs, within which are replicates and potentially bias adjustment runs. It writes two data.frames to file: one for single scalar values (e.g. MSY) and a second that contains output for each year of the same model (timeseries, e.g. biomass(year)). These can always be joined later.
The directory which contains scenario folders with results.
A switch to determine if existing files should be overwritten, useful for testing purposes or if new replicates are run.
A character vector of scenarios that should be read
in. Default is
Should the function be run on multiple cores? You will
need to set up parallel processing as shown in
Creates two .csv files in the current working directory:
Cole Monnahan, Merrill Rudd
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