cleanup_ss3: Clean up after an SS3 run

In ss3sim: Fisheries Stock Assessment Simulation Testing with Stock Synthesis

Description

Removes all of the unwanted output files from the specified directory.

Usage

cleanup_ss3(dir_name, clean_vector = c("admodel.*", "ss3.eva",
  "fmin.log", "*.rpt", "variance", "ss3.b0*", "ss3.p0*", "ss3.r0*",
  "ss3.bar", "ss3.cor", "ss3.log", "ss3.rep", "checkup.sso",
  "cumreport.sso", "derived_posteriors.sso ", "echoinput.sso",
  "parmtrace.sso", "posterior_vectors.sso", "posteriors.sso",
  "rebuild.sso", "sis_table.sso", "data.ss_new", "forecast.ss_new",
  "control.ss_new", "starter.ss_new", "wtatage.ss_new"))

Arguments

dir_name	The directory of interest, the function ignores case (i.e. names can be specified as lower or upper case)
clean_vector	A vector of characters specifying the unwanted files to be removed. The function allows the use of wildcards (i.e. "*").

Author(s)

Kelli Johnson

ss3sim documentation built on Nov. 9, 2019, 1:06 a.m.