nucleotideDiversity: Nucleotide Diversity
In strataG: Summaries and Population Structure Analyses of Genetic Data

Calculate nucleotide diversity for set of haplotypes.

1	nucleotideDiversity(x, bases = c("a", "c", "g", "t"), simplify = TRUE)

`x`	a set of sequences or a gtypes object with sequences.
`bases`	nucleotides to consider when calculating diversity.
`simplify`	if `TRUE` and only one loci exists, return a vector, otherwise, a list of vectors with one element per locus will be returned.

Vector of nucleotide diversity by site.

data(dloop.g)

nd <- nucleotideDiversity(dloop.g)
quantile(nd)

strataG documentation built on Feb. 28, 2020, 9:07 a.m.

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