structurePlot: Plot STRUCTURE Results
In strataG: Summaries and Population Structure Analyses of Genetic Data

Description Usage Arguments Value Author(s) See Also

Plot Q-matrix from a call to structure or clumpp.

structurePlot(
  q.mat,
  pop.col = 3,
  prob.col = 4,
  sort.probs = TRUE,
  label.pops = TRUE,
  col = NULL,
  horiz = TRUE,
  type = NULL,
  legend.position = c("top", "left", "right", "bottom", "none"),
  plot = TRUE
)

`q.mat`	matrix or data.frame of assignment probabilities.
`pop.col`	column number identifying original population designations.
`prob.col`	column number of first assignment probabilities to first group. It is assumed that the remainder of columns (`prob.col:ncol(q.mat)`) contain all assignment probabilities.
`sort.probs`	logical. Sort individuals by probabilities within populations? If `FALSE` individuals will be plotted as in `q.mat`.
`label.pops`	logical. Label the populations on the plot?
`col`	colors to use for each group.
`horiz`	logical. Plot bars horizontally.
`type`	either `"area"` for stacked continuous area plot or `"bar"` for discrete stacked bar chart. The latter is prefered for small numbers of samples. If not specified, a bar chart will be used if there are <= 100 samples.
`legend.position`	the position of the legend (`"top", "left", "right", "bottom"`, or two-element numeric vector).
`plot`	display plot?