concRespPlot: Concentration Response Plot

In tcplfit2: Concentration-Response Modeling of HTS or Transcriptomics Data

Concentration Response Plot

Description

Plots a concentration response curve for one sample/endpoint combination. This is a generic function and it is expected that users will make their own versions

Usage

concRespPlot(row, ymin = -120, ymax = 120, draw.error.arrows = FALSE)

Arguments

row	Named list containing: conc - conc string separated by |'s resp - response string separated by |'s method - scoring method determines plot bounds name - chemical name for plot title cutoff - noise cutoff bmr - baseline median response; level at which bmd is calculated er - fitted error term for plotting error bars a, tp, b, ga, p, la, q - other model parameters for fit curve fit_method - curve fit method bmd, bmdl, bmdu - bmd, bmd lower bound, and bmd upper bound ac50, acc - curve value at 50% of top, curve value at cutoff top - curve top name - name of the chemical assay - name of the assay, signature, or other endpoint other identifiers Other elements are ignored.
ymin	Minimum value of response for the plot
ymax	Maximum value of response for the plot
draw.error.arrows	If TRUE, draw lines representing the uncertainty in the response estimate, instead of the actual response points

Details

row is one row of data from concRespCore

Value

No output.

Examples

conc <- list(.03, .1, .3, 1, 3, 10, 30, 100)
resp <- list(0, .2, .1, .4, .7, .9, .6, 1.2)
row <- list(conc = conc,
            resp = resp,
            bmed = 0,
            cutoff = 0.25,
            onesd = 0.125,
            name = "some chemical",
            assay = "some assay")
res <- concRespCore(row, conthits = TRUE)
concRespPlot(res,ymin=-2.5,ymax=2.,5)

tcplfit2 documentation built on Oct. 11, 2023, 1:07 a.m.