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trace: Tandem Repeat Analysis by Capillary Electrophoresis
A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).
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Package details |
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| Author | Zachariah McLean [aut, cre, cph] (<https://orcid.org/0000-0002-0968-0538>), Kevin Correia [aut], Andrew Jiang [ctb] |
| Maintainer | Zachariah McLean <zachariah.louis.mclean@gmail.com> |
| License | MIT + file LICENSE |
| Version | 0.6.0 |
| URL | https://zachariahmclean.github.io/trace/ |
| Package repository | View on CRAN |
| Installation |
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