plot_fragments | R Documentation |
Plots peak data from a list of fragments.
plot_fragments(
fragments_list,
n_facet_col = 1,
sample_subset = NULL,
xlim = NULL,
ylim = NULL
)
fragments_list |
A list of fragments_repeats objects containing fragment data. |
n_facet_col |
A numeric value indicating the number of columns for faceting in the plot. |
sample_subset |
A character vector of unique ids for a subset of samples to plot |
xlim |
the x limits of the plot. A numeric vector of length two. |
ylim |
the y limits of the plot. A numeric vector of length two. |
A plot object displaying the peak data.
gm_raw <- trace::example_data
fragments_list <- peak_table_to_fragments(gm_raw,
data_format = "genemapper5",
dye_channel = "B",
min_size_bp = 300
)
find_alleles(
fragments_list
)
plot_fragments(fragments_list[1])
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